Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FAH1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34770 376 / 1e-133 ATFAH1, FAH1 ARABIDOPSIS FATTY ACID HYDROXYLASE 1, fatty acid hydroxylase 1 (.1) AT4G20870 368 / 8e-131 FAH2, ATFAH2 ARABIDOPSIS FATTY ACID HYDROXYLASE 2, fatty acid hydroxylase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162000 [exp] 460 / 5e-167 AT2G34770 374 / 3e-133 ARABIDOPSIS FATTY ACID HYDROXYLASE 1, fatty acid hydroxylase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023359 [exp] 420 / 4e-151 AT2G34770 366 / 9e-130 ARABIDOPSIS FATTY ACID HYDROXYLASE 1, fatty acid hydroxylase 1 (.1) Lus10038447 [exp] 368 / 3e-117 AT2G34780 323 / 1e-100 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [poplar] [flax] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Potri.001G463800.2 pacid=42789892 polypeptide=Potri.001G463800.2.p locus=Potri.001G463800 ID=Potri.001G463800.2.v4.1 annot-version=v4.1 ATGGTAGCACAGGAATTCACTGTTGATCTAGACAAGCCCCTTGTCTTCCAGGTTGGCCATCTTGGAGAAACTTATGAGGAATGGGTGCACCAGCCTATTG TAAGCAGGGAAGGCCCTAGGTTTTTTGAGAATGATTTTATAGAGTCCTTGACACGCACTGTTTGGTGGGCGATTCCTTCAATTTGGCTGCCTGTTGTATG CTATTGCGTCTTAAAGTCTGCAAAGATGGGGCATGCGCTTCCTGAGATAGCCTTAATGGTGGTTGGTGGTGTTTTCGTTTGGACATTGCTCGAATACACT TTGCATCGCTTCCTTTTCCACATAAAAACAAAAAGTTATTGGGGGAACACAGCACATTATCTTCTTCATGGTTGTCATCATAAGCACCCTATGGATGGTC TCCGCCTTGTTTTTCCTCCAGCAGCAACAGCTATTCTCTTGGTGCCTTTCTGGAATATGGTCTCGTTGTTTGCCACTCCTTCAATTACTCCTGCTCTTTT CGGAGGTGGTTTACTGGGCTATGTGATGTATGACTGCACTCACTACTACCTGCACCATGGTCAGCCTGCAAATGATGTACCAAAAAATCTCAAGAAATAT CACATGAACCATCACTTCCGGGTCCAAGACAAGGGATTCGGAATCACTTCCGCGTTGTGGGACAGAGTTTTTGGAACACTTCCTCCATCAAAAATGGCAA AGAAAATGTAG
AA sequence Show only first row Show all	>Potri.001G463800.2 pacid=42789892 polypeptide=Potri.001G463800.2.p locus=Potri.001G463800 ID=Potri.001G463800.2.v4.1 annot-version=v4.1 MVAQEFTVDLDKPLVFQVGHLGETYEEWVHQPIVSREGPRFFENDFIESLTRTVWWAIPSIWLPVVCYCVLKSAKMGHALPEIALMVVGGVFVWTLLEYT LHRFLFHIKTKSYWGNTAHYLLHGCHHKHPMDGLRLVFPPAATAILLVPFWNMVSLFATPSITPALFGGGLLGYVMYDCTHYYLHHGQPANDVPKNLKKY HMNHHFRVQDKGFGITSALWDRVFGTLPPSKMAKKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.001G463800 [exp]	0	1	FAH1.2
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	2.00	0.8530
AT5G35740			Carbohydrate-binding X8 domain...		Potri.014G164600 [exp]	3.16	0.8272
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.009G074800 [exp]	5.74	0.8023
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	6.48	0.8427
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Potri.001G360700 [exp]	7.34	0.7371
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.005G070300 [exp]	8.48	0.8137
AT2G19880			Nucleotide-diphospho-sugar tra...		Potri.018G087700 [exp]	9.16	0.7731
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	10.24	0.8355
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.010G220100 [exp]	11.83	0.7993
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	13.71	0.8332

Compare expression of checked genes

Potri.001G463800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.