Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15930 347 / 1e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 346 / 2e-110 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31430 336 / 2e-108 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G22410 330 / 1e-104 SLO1 SLOW GROWTH 1 (.1) AT1G50270 317 / 1e-100 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 308 / 4e-96 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 306 / 8e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 305 / 3e-95 MEF22 mitochondrial editing factor 22 (.1) AT4G38010 298 / 3e-94 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G26782 293 / 3e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044700 [exp] 361 / 4e-116 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 358 / 2e-114 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 350 / 8e-113 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.003G031600 [exp] 341 / 2e-108 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G088600 [exp] 337 / 9e-108 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G086200 [exp] 325 / 1e-102 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G135600 [exp] 319 / 1e-101 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G217900 [exp] 311 / 6e-98 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.018G071800 [exp] 311 / 3e-97 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004052 [exp] 336 / 7e-108 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002288 [exp] 332 / 2e-106 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018223 [exp] 332 / 5e-105 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 328 / 6e-105 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 322 / 3e-101 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 303 / 4e-95 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031661 [exp] 302 / 7e-95 AT2G29760 427 / 3e-141 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 298 / 5e-93 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033858 [exp] 296 / 1e-92 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027408 [exp] 294 / 2e-92 AT2G29760 405 / 5e-133 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G464200.1 pacid=42787651 polypeptide=Potri.001G464200.1.p locus=Potri.001G464200 ID=Potri.001G464200.1.v4.1 annot-version=v4.1 ATGTGCTACAATCACTTGCAAAAAATTCTCTTGTCCCTCAAAACAAAAGCCCTTAACATCAAATTTCTTGATCAAATCCTCACCCACACCATCACAACTG GCTTCACTTATTCCACCCCAACATGGAACTGCCTTATTAGAGCCTATTCTAGAAGCCCCACCGCACCCATCAAAGCCATTCTTGTCTACAACTTCTTCAT TAAAACATGCTCAACTAGACCTGATAACTACACCTACCCGTGTCTACTCAAGGCTTGTTCACGTTTGTTTACTGATTCTAATGGCAAACAAGTGCATACC CATGTGATAAAAACTGGCCTAGATTCTGACATTTATGTCCAAAATGCTCTTGTCCATTTTTATGGCTCTGTCGGCAACTCAACTGATGCTTGCTTTCTGT TTGATAGAATGCCTGACAGAGATGTTGCAAGCTGGAATTCTCTGATGGGCATTTATAATACCAATAATTCATTCACTGAAGTGATGGTTTTGTTCAAAAA GTTGATGTGTGGATGTGTTAAAGCTGATAAGATCAGTTTGGTGATTGTATTGTCAGCTTGTGCACAGGCACAAATGGAGGGTCTAGAGTATGGAAGGTCA GTCCATGGCTATGTAATAAAAGTGGGGTTTGGATGTTTTTTGAATGTGGATAATGCGTTGTTGAATTTTTACATTAAGTGCAAAGAAATTGATGATGCGT CGAAAATGTTTGATGAATTTGTTCATGAAGGAGATGTTGTCTCGTATACGATTTTGATCAATGCTTATGTTGAGATGGGGCTGATAGATTTGGCTCGCGA TGTCTTTGATGAGATTGTTGATAAAGATCGTGTTTTGTGGAACTTGATGGTTCATGCGTATGTTAAGGCACGGTGTCCGAATGAGGCGTTGGACCTTTTC GAGAAAATGGATAGTGCGGGGGTGATACCAGATGAAAATACAATGGTTAGTGTTCTTTTAGCTTGTGCCAGCATATCGGACCTGCAGTGTGCTCGGCTTC TTCATCGGTTCATTAACCGGAATAGCAATGTAAGACAGGATGTTTTTCTGAAAACAGCCCTGATTACTATGTATTCGAAGTGTGGGAGCGTGGAGGAGGC CTTGGTTACCTTTTATAAGATGGAATACACAGATGTTTTTACTTGGACTGCAATGATTGAAGGGCTTGCAAACAATGGGTATGGGAATGAAGCTTTGAGT ATGTTTAATCGGATGGAAAACCAAGGAATTAGGCCTAATGAATCCACGCTTGTTTCAGTGTTAACAGCTTGCATCCATTCTGGGTTAGTTAAAGAAGGTT GCCAATTATTCAAAAGTATGGTCAGTGATTACAAAATGCAACTGAAGATGGAGCACTTTGGCTGTCTAATTGATCTACTAAGTAGAGCGGGACTTTTGCA TCAGGCAGAAGAGTTCATTCAGTTGCTGCTACCTGAGGAAAGGCTCATAGCTTATAAAACTTTGCTGAGTGCTTGCATGAAGTATTCAGAATTTGATTTC GGAAAGAAGGTTGCAAATGAAATGTCGAAGTTGAGTTCTAATAGCCATGAAACTCGTATCCTGCTATCCAACTTCTATGCCCTGGCAGGTCAATGGGCTC AGGTTGCAGAGACTAGAAAATTCATAAAAGAATTTGACACAAGAAAGGCGCCTGGCATGAGTTTTGTGGATGTAAAACCATGA
AA sequence Show only first row Show all	>Potri.001G464200.1 pacid=42787651 polypeptide=Potri.001G464200.1.p locus=Potri.001G464200 ID=Potri.001G464200.1.v4.1 annot-version=v4.1 MCYNHLQKILLSLKTKALNIKFLDQILTHTITTGFTYSTPTWNCLIRAYSRSPTAPIKAILVYNFFIKTCSTRPDNYTYPCLLKACSRLFTDSNGKQVHT HVIKTGLDSDIYVQNALVHFYGSVGNSTDACFLFDRMPDRDVASWNSLMGIYNTNNSFTEVMVLFKKLMCGCVKADKISLVIVLSACAQAQMEGLEYGRS VHGYVIKVGFGCFLNVDNALLNFYIKCKEIDDASKMFDEFVHEGDVVSYTILINAYVEMGLIDLARDVFDEIVDKDRVLWNLMVHAYVKARCPNEALDLF EKMDSAGVIPDENTMVSVLLACASISDLQCARLLHRFINRNSNVRQDVFLKTALITMYSKCGSVEEALVTFYKMEYTDVFTWTAMIEGLANNGYGNEALS MFNRMENQGIRPNESTLVSVLTACIHSGLVKEGCQLFKSMVSDYKMQLKMEHFGCLIDLLSRAGLLHQAEEFIQLLLPEERLIAYKTLLSACMKYSEFDF GKKVANEMSKLSSNSHETRILLSNFYALAGQWAQVAETRKFIKEFDTRKAPGMSFVDVKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.001G464200 [exp]	0	1
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	1.00	0.9595
AT1G09190			Tetratricopeptide repeat (TPR)...		Potri.005G019400 [exp]	1.73	0.9155
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G141200 [exp]	2.00	0.9191
AT2G44850			unknown protein		Potri.002G137300 [exp]	2.82	0.9041
AT3G06920			Tetratricopeptide repeat (TPR)...		Potri.010G014100 [exp]	4.69	0.8624
AT5G07900			Mitochondrial transcription te...		Potri.015G038500 [exp]	5.91	0.8792
AT3G26782			Tetratricopeptide repeat (TPR)...		Potri.001G322100 [exp]	6.48	0.8973
AT2G36730			Pentatricopeptide repeat (PPR)...		Potri.017G083900 [exp]	7.41	0.9039
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.002G220300 [exp]	8.36	0.8662
AT1G14140			Mitochondrial substrate carrie...		Potri.010G165900 [exp]	8.48	0.8778

Compare expression of checked genes

Potri.001G464200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.