Plant FIBer expression Database

Potri.001G464300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G20880 86 / 7e-18 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1)
AT5G44350 60 / 1e-09 ethylene-responsive nuclear protein -related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G162400
[exp]
476 / 5e-166 AT4G20880 75 / 3e-14 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038459
[exp]
91 / 3e-20 AT4G20880 92 / 2e-21 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1)
Lus10023347
[exp]
91 / 3e-20 AT4G20880 88 / 2e-19 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1)
PFAM info
Representative CDS sequence
>Potri.001G464300.1 pacid=42791588 polypeptide=Potri.001G464300.1.p locus=Potri.001G464300 ID=Potri.001G464300.1.v4.1 annot-version=v4.1
ATGCCTTTGCCATGGAAAAAGACCAGAGTTTCAAGATTTTCACGTCTTGTGGCAGATCTTCAGTCACCAAAAAGAGGGAATTCTCTTGTTGTTGAGACTG
GTTTCCCTACTTCTCTTATTGATCTCTTTCACAAGAACCGTGAAAGGTTAAAGAAACCAACTGCCAAGAAGAAAAAGAGGAGACAACAGCAGTTGCAAGA
GGTGGAGGAGGAACTTGTAATCTCTGATCCAATTCCTTTATCAAGTTCTCGAGACTTGGTGGATGTACCAGAGCCTATTCAGAATTTGGAGAATGTGGAA
AGTTTTGACGCTTGTGAATTGGTGAGTCAGTTATTGCCTGTTGTTGAAGGTGTTGATGATGTTGATAATGTTACGGTTACTGATAAGAAATGTTGGGATG
AGAAAGAGAAACGTTTGTTATTTGTGGTTTTGAAGATGTTTTTGGTGTTGGTTTTGGGTTTAAGTACTAAAGGGCTTGTTGTTGGGATAACAATGTCTGC
TTTTGTGCTTATTTTTCTTGAATATGTGGGAAAACATGTGTTATGTTTCTTGAAACTATGTTTGAGTGTAGAGCTAGTCTTAGAACCTTTTGTCGAAAGG
GTTTCTTCAGCATTTTTTATGTTGAAAGGGGTAAGGAAATGTGAAGATTCGAGTAAAGGATTGATCATTCAAGAAATAGATCAAGAAGAAGCTGTTAGTG
GGGTTGATTCATGTGATTTGATTGAGACTCTTGAAATGAAGTCTTCTGTTGAGGAAATTCAAGCTGTAGAAGTTAATTTTGATATGATTGTGCCAGTCGA
AGAAAATAGGGGAGCCGAATCAAGAATGGATTTACTCAGTTGTGATGGGAAAAAGATGAGGATAGTGGAGATAGAGGAAGATAGAAGTGGAGTTTTGGTA
TGTGAAAAAGAGAAGAGCCGAAACTCTAAGATCAGAAGAAAGATTATACAGAAATTAGTGCCCAAGAAGTTGCGTGCTGTAAAGAAGGCAAAGAAGAATA
ATGATAAGGAACCAGATTTTGGTAGTGAATCATCTAGTTGTTGGGGAGACGTTGAGGGGAGAATTGAAGAGGGAATAAATGAGAGAAAAGGAGAAGAACC
CTATCAGGGAATTTCTAGTTCTAGCACTGGATGGCAGGCTAAAATGGAAGTGGTTGTAGTCGAAAAGGGGAAAACCGAAAAAAAGGGCAGTTCAGATTAC
CTGATTCTCTTTTTTGTTGCGCTTGCTGGACTTGTAGGAGGTCGGAGTCTATCCCTTGTACTTACACTTGCAGCATGTTTGATGATAAAATTGGTTGCAA
GATATAGATGTGTAAATGAGCCTATGAATAGGTCCCCTGCTTCAATTTCAAGCTAG
AA sequence
>Potri.001G464300.1 pacid=42791588 polypeptide=Potri.001G464300.1.p locus=Potri.001G464300 ID=Potri.001G464300.1.v4.1 annot-version=v4.1
MPLPWKKTRVSRFSRLVADLQSPKRGNSLVVETGFPTSLIDLFHKNRERLKKPTAKKKKRRQQQLQEVEEELVISDPIPLSSSRDLVDVPEPIQNLENVE
SFDACELVSQLLPVVEGVDDVDNVTVTDKKCWDEKEKRLLFVVLKMFLVLVLGLSTKGLVVGITMSAFVLIFLEYVGKHVLCFLKLCLSVELVLEPFVER
VSSAFFMLKGVRKCEDSSKGLIIQEIDQEEAVSGVDSCDLIETLEMKSSVEEIQAVEVNFDMIVPVEENRGAESRMDLLSCDGKKMRIVEIEEDRSGVLV
CEKEKSRNSKIRRKIIQKLVPKKLRAVKKAKKNNDKEPDFGSESSSCWGDVEGRIEEGINERKGEEPYQGISSSSTGWQAKMEVVVVEKGKTEKKGSSDY
LILFFVALAGLVGGRSLSLVLTLAACLMIKLVARYRCVNEPMNRSPASISS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G20880 ethylene-responsive nuclear pr... Potri.001G464300
[exp]
0 1
AT3G25250 AtOXI1, OXI1, A... oxidative signal-inducible1, A... Potri.002G248900
[exp]
3.46 0.8237
AT1G01550 BPS1 BYPASS 1, Protein of unknown f... Potri.010G171000
[exp]
4.47 0.8863
AT3G46620 zinc finger (C3HC4-type RING f... Potri.001G243300
[exp]
4.58 0.8919
AT5G67250 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/AS... Potri.007G048101
[exp]
5.09 0.8933
AT1G19210 AP2_ERF Integrase-type DNA-binding sup... Potri.006G138700
[exp]
7.74 0.8626
AT2G37430 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers sup... Potri.001G235800
[exp]
9.74 0.8702
AT2G45760 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE... Potri.014G078700
[exp]
12.40 0.8154 BAP2.2
AT4G17230 GRAS SCL13 SCARECROW-like 13 (.1) Potri.006G016200
[exp]
12.68 0.7959 GRAS52
AT3G03280 unknown protein Potri.006G105600
[exp]
14.69 0.8369
AT3G46620 zinc finger (C3HC4-type RING f... Potri.009G034800
[exp]
15.55 0.8265

Potri.001G464300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.