Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GER2.25
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39190 203 / 2e-65 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39160 202 / 7e-65 RmlC-like cupins superfamily protein (.1.2.3) AT3G05950 200 / 3e-64 RmlC-like cupins superfamily protein (.1) AT5G39130 199 / 6e-64 RmlC-like cupins superfamily protein (.1) AT5G39120 198 / 1e-63 RmlC-like cupins superfamily protein (.1) AT5G39180 197 / 6e-63 RmlC-like cupins superfamily protein (.1) AT5G39150 196 / 8e-63 RmlC-like cupins superfamily protein (.1) AT3G04200 195 / 2e-62 RmlC-like cupins superfamily protein (.1) AT5G39110 195 / 3e-62 RmlC-like cupins superfamily protein (.1) AT4G14630 191 / 1e-60 GLP9 germin-like protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162200 [exp] 269 / 2e-91 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 265 / 1e-89 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464100 [exp] 251 / 2e-84 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.011G162600 [exp] 248 / 5e-83 AT3G05950 209 / 2e-68 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 243 / 2e-81 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 242 / 8e-81 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 240 / 4e-80 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.001G465100 [exp] 238 / 2e-79 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163216 [exp] 235 / 3e-78 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035278 [exp] 246 / 4e-82 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 241 / 3e-80 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 238 / 4e-79 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 237 / 8e-79 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035279 [exp] 237 / 1e-78 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3) Lus10032016 [exp] 236 / 2e-78 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10026962 [exp] 235 / 4e-78 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10035185 [exp] 234 / 1e-77 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10029010 [exp] 231 / 3e-76 AT3G05950 250 / 2e-84 RmlC-like cupins superfamily protein (.1) Lus10035186 [exp] 229 / 2e-75 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF07883 [poplar] [flax] Cupin_2 Cupin domain
Representative CDS sequence Show only first row Show all	>Potri.001G464500.2 pacid=42793241 polypeptide=Potri.001G464500.2.p locus=Potri.001G464500 ID=Potri.001G464500.2.v4.1 annot-version=v4.1 ATGCAGGCATTGGACGGCACAAATTCCTTCGAAGGCCAGTTCTTGGACTGTTCATCCATCACTACATATAAGAGTTCCTGCATGTATACATGCACTTCAT CAGTACTGCAGTTCATCAATATCTTGCTATTACCTCAAGCAATTGATATGGCTAGCCACATTTTGTTGGTTATTGCGAGTTTTCTAGCCATCATTTGTGC CTCGGCCACTGCCTCCGATCCTAGTCCATTGCAAGATTTTTGCGTTGCCGATCCTACTAGCTCAGTAAGAGTTAATGGCCTACCTTGTATGGATCCGAAG CTGGTAAATGCAAGCCATTTCTTCTCCAGTGAACTCCGTGTGCCTGGCAACACATCAAATCCCATTGGATTCACAGTCACTATTGCCCAAATACCTGGAC TGAATACTCTTGGGCTCGCATTGGGTCGCGGAGACTATGCGCCGGAAGGAACATCAACCCTCCACACACACCCTCGGGCAACTGAAATTACAACCGTCTT AGAAGGCAGCTTAATTGCTGGATTTGTAACCTCAAATCCGGAAAACAGGCTCGTTTGGAAGGTGCTTCAAAAGGGTGATGTGTTTGTCTTTCCCATTGGA CTAGTTCACTTTACGTTTAATGTAGGCAATGGACCTACTGCTACTATTGCTGCTTTTACCAGTCAGAGCCCAGGTTTCATTCGAGTTGGTGATTTGTTTG CAACCAATCCATCCATTCCTGATGATATTCTGGCCAAGGCTTTCCAGGTGGACGAATCTGTAATTCGCAAACTTCGACCATGA
AA sequence Show only first row Show all	>Potri.001G464500.2 pacid=42793241 polypeptide=Potri.001G464500.2.p locus=Potri.001G464500 ID=Potri.001G464500.2.v4.1 annot-version=v4.1 MQALDGTNSFEGQFLDCSSITTYKSSCMYTCTSSVLQFINILLLPQAIDMASHILLVIASFLAIICASATASDPSPLQDFCVADPTSSVRVNGLPCMDPK LVNASHFFSSELRVPGNTSNPIGFTVTIAQIPGLNTLGLALGRGDYAPEGTSTLHTHPRATEITTVLEGSLIAGFVTSNPENRLVWKVLQKGDVFVFPIG LVHFTFNVGNGPTATIAAFTSQSPGFIRVGDLFATNPSIPDDILAKAFQVDESVIRKLRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Potri.001G464500 [exp]	0	1	GER2.25
AT4G15040			Subtilisin-like serine endopep...		Potri.003G120350 [exp]	1.00	0.9634
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Potri.011G131051 [exp]	2.44	0.9256
AT3G05600			alpha/beta-Hydrolases superfam...		Potri.013G013500 [exp]	2.44	0.9429
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.010G092800 [exp]	15.96	0.8982
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.013G040401 [exp]	18.97	0.8445
AT1G54830	CCAAT	NF-YC3	"nuclear factor Y, subunit C3"...		Potri.003G124500 [exp]	30.16	0.9270
AT5G35110			unknown protein		Potri.018G113901 [exp]	36.56	0.9157
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.019G023006 [exp]	38.88	0.9141
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.019G023014 [exp]	41.56	0.9120
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.019G023020 [exp]	44.27	0.9080

Compare expression of checked genes

Potri.001G464500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.