Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44440 483 / 6e-167 FAD-binding Berberine family protein (.1) AT4G20820 478 / 8e-165 FAD-binding Berberine family protein (.1) AT1G30700 471 / 6e-162 FAD-binding Berberine family protein (.1) AT1G26420 456 / 2e-156 FAD-binding Berberine family protein (.1) AT1G26410 454 / 4e-155 FAD-binding Berberine family protein (.1) AT5G44410 452 / 1e-154 FAD-binding Berberine family protein (.1) AT1G26380 452 / 2e-154 FAD-binding Berberine family protein (.1) AT4G20860 449 / 1e-153 FAD-binding Berberine family protein (.1) AT5G44360 439 / 1e-149 FAD-binding Berberine family protein (.1) AT1G26390 437 / 5e-149 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162884 [exp] 744 / 0 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 739 / 0 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G464800 [exp] 738 / 0 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 737 / 0 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162828 [exp] 734 / 0 AT5G44440 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162800 [exp] 729 / 0 AT5G44440 540 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162856 [exp] 725 / 0 AT5G44440 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162940 [exp] 712 / 0 AT5G44440 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163232 [exp] 711 / 0 AT5G44440 536 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032943 [exp] 556 / 0 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 509 / 8e-177 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 492 / 3e-170 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 490 / 2e-169 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10026775 [exp] 488 / 1e-168 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 488 / 3e-168 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 483 / 3e-167 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 470 / 1e-161 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 468 / 2e-161 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038446 [exp] 464 / 2e-159 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.001G464700.1 pacid=42792649 polypeptide=Potri.001G464700.1.p locus=Potri.001G464700 ID=Potri.001G464700.1.v4.1 annot-version=v4.1 ATGCCTCCTCGAAACGCTTCAATGCTTCCGTTTCTAGTTTTTCTTCTCTCTTCGTCCTCGTTGGCAACATCATCTCACACCCACGAGGATTTTCTTCGAT GCCTTTCCCTCTATTTTGAGGATCCTGTAGCCATTTCGAAGGTTGTTTACACCTCAAACAACTCTTCGTATTCCTCTGTCTTGCACTTCTCAATACGAAA CCTCAGGTTTAATTCTTCTACACTAAAACCTCTGGTCATAGTCACACCAACGGATCTGTCGCATATTCAGGCTACCATTCACTGTTCCCGACACCACAAT TTACAAATTAGGATGAGGAGTGGTGGCCATGATTTTGAGGGTCTATCTTACAGGTCTGTTCTCCCATTTGTTGTCGTTGATTTAATCAATCTTCGAACCA TCACTGTTGATGCAACGAATAGAACTGCATGGGTTCAGGCTGGTGCAACGCTAGGCGAACTTTATTATAGAATTGTTGAGAAAAGTAGAACTCTCGCTTT CCCAGCAGGTTCTTGCCCTACTGTAGGTGTTGGGGGACACTTCAGTGGAGGAGGATATGGGCTGTTGCTCCGCAAATATGGACTTGCTGCTGATAATATA GTTGATGCTCAATTAATAGATGCTAAAGGCAGGATCCTTGACAGGGAATCAATGGGAGACGACTTATTCTGGGCCATTCGAGGGGGTGGAGGAAATAGCT TTGGAGTGGTTGTTGCTTGGAAAATAAACTTGGTTGAAGTTCCATCTACAGTGACCGTCTTCACTGTCGTAAGAAACTTGGAACAAAACGCAACCAAGCT AATCCATCAGTGGCAATACGTTGCAAATAAGCTTCCTGAAGATCTCTTCCTTGCAGCGGTTATAAGAAGAGTTAATTCTAGCCAAGGAGGAAATACAGCA GTACAAGCTATATTTGTTTCCCTATTTCTTGGCAAGGTTGACCAGCTTCTTCCGTGGATGCACGGGAGCTTTCCTGACCTCGGTATAGTAAGAGATGACT GCATCGAAATGAGTTGGATTGAGTCCATCCTCTACGTTTATGGATTCCCAAGGAATGCATCCTTGGATGTGTTGCTCGACAGGAGTTCTCAATCCTTAAT AAATTTCAAAGTAAAGTCTGATTATGTGAAGGAGCCTATGGCTGAAATTGTATTGAAAGAGATATGGGAAAGGTTTTCTGACGAAAACATGGAGGTGTCT GCAATGAGTTTCATTCCTTATGGAGGAAAAATGAATAAGATTTCAGAGTCTAGCATTCCATTTCCACATAGAGCTGGTAATCTATACAAAATTATCCATA CGGTGGCTTGGAGTGAAGAAACCGCATCAGAAAGGCATCTAGCATGGATCAGAAGGCTTTACGGTTACATGACTTCTTATGTTTCGCAAAAACCTCGAGA AGCATATATCAATTATAGGGATCTTGACATCGGAATGAATAACCCTGTAGGCAGCACAAGTTATGGACAAGCAAGCATCTGGGGTAGGAAATATTTCAAG AACAACTTCGACAAGTTGGTACGAGTGAAGACTGAAGTTGATCCTGCAAATTTCTTTAGAAATGAGCAAAGCATACCACCTCTCTCACCATGGTGA
AA sequence Show only first row Show all	>Potri.001G464700.1 pacid=42792649 polypeptide=Potri.001G464700.1.p locus=Potri.001G464700 ID=Potri.001G464700.1.v4.1 annot-version=v4.1 MPPRNASMLPFLVFLLSSSSLATSSHTHEDFLRCLSLYFEDPVAISKVVYTSNNSSYSSVLHFSIRNLRFNSSTLKPLVIVTPTDLSHIQATIHCSRHHN LQIRMRSGGHDFEGLSYRSVLPFVVVDLINLRTITVDATNRTAWVQAGATLGELYYRIVEKSRTLAFPAGSCPTVGVGGHFSGGGYGLLLRKYGLAADNI VDAQLIDAKGRILDRESMGDDLFWAIRGGGGNSFGVVVAWKINLVEVPSTVTVFTVVRNLEQNATKLIHQWQYVANKLPEDLFLAAVIRRVNSSQGGNTA VQAIFVSLFLGKVDQLLPWMHGSFPDLGIVRDDCIEMSWIESILYVYGFPRNASLDVLLDRSSQSLINFKVKSDYVKEPMAEIVLKEIWERFSDENMEVS AMSFIPYGGKMNKISESSIPFPHRAGNLYKIIHTVAWSEETASERHLAWIRRLYGYMTSYVSQKPREAYINYRDLDIGMNNPVGSTSYGQASIWGRKYFK NNFDKLVRVKTEVDPANFFRNEQSIPPLSPW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44440			FAD-binding Berberine family p...		Potri.001G464700 [exp]	0	1
AT4G08780			Peroxidase superfamily protein...		Potri.003G214900 [exp]	2.44	0.9361
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.016G073900 [exp]	3.16	0.9397	CTS2.13
					Potri.014G141600 [exp]	3.31	0.9089
AT5G22410		RHS18	root hair specific 18 (.1)		Potri.001G218450 [exp]	4.47	0.9303
AT4G35690			Arabidopsis protein of unknown...		Potri.005G103700 [exp]	5.47	0.9023
					Potri.019G090900 [exp]	6.32	0.9101
AT5G22410		RHS18	root hair specific 18 (.1)		Potri.001G218500 [exp]	6.92	0.9259
AT5G63660		LCR74, PDF2.5	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Potri.004G138100 [exp]	7.93	0.9229
AT4G35160			O-methyltransferase family pro...		Potri.011G059600 [exp]	8.66	0.9262	FOMT8,OOMT2.20
AT2G38870			Serine protease inhibitor, pot...		Potri.006G212000 [exp]	9.38	0.9145

Compare expression of checked genes

Potri.001G464700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.