Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16360 98 / 9e-27 AHP4 HPT phosphotransmitter 4 (.1.2) AT3G21510 65 / 6e-14 ATHP3, AHP1 histidine-containing phosphotransmitter 1 (.1) AT5G39340 64 / 2e-13 ATHP2, AHP3 ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, histidine-containing phosphotransmitter 3 (.1) AT3G29350 62 / 1e-12 ATHP1, AHP2 histidine-containing phosphotransmitter 2 (.1.2) AT1G03430 57 / 9e-11 AHP5 histidine-containing phosphotransfer factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046800 [exp] 107 / 2e-30 AT3G16360 170 / 3e-55 HPT phosphotransmitter 4 (.1.2) Potri.001G189900 [exp] 105 / 9e-30 AT3G16360 239 / 1e-82 HPT phosphotransmitter 4 (.1.2) Potri.006G236300 [exp] 102 / 2e-28 AT3G16360 199 / 1e-66 HPT phosphotransmitter 4 (.1.2) Potri.013G028300 [exp] 79 / 2e-19 AT3G21510 183 / 2e-60 histidine-containing phosphotransmitter 1 (.1) Potri.005G040400 [exp] 73 / 6e-17 AT3G21510 181 / 1e-59 histidine-containing phosphotransmitter 1 (.1) Potri.010G027100 [exp] 72 / 2e-16 AT3G21510 206 / 5e-69 histidine-containing phosphotransmitter 1 (.1) Potri.006G098200 [exp] 68 / 5e-15 AT1G03430 207 / 7e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.016G113500 [exp] 67 / 7e-15 AT1G03430 210 / 1e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.008G197600 [exp] 67 / 9e-15 AT3G21510 193 / 3e-64 histidine-containing phosphotransmitter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025821 [exp] 102 / 1e-28 AT3G16360 226 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10038280 [exp] 102 / 3e-28 AT3G16360 225 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10002256 [exp] 76 / 2e-18 AT3G21510 154 / 3e-49 histidine-containing phosphotransmitter 1 (.1) Lus10012777 [exp] 74 / 4e-17 AT3G21510 216 / 5e-73 histidine-containing phosphotransmitter 1 (.1) Lus10033999 [exp] 73 / 6e-17 AT3G21510 216 / 3e-73 histidine-containing phosphotransmitter 1 (.1) Lus10035596 [exp] 69 / 2e-15 AT3G16360 103 / 5e-29 HPT phosphotransmitter 4 (.1.2) Lus10003256 [exp] 67 / 2e-14 AT1G03430 105 / 1e-29 histidine-containing phosphotransfer factor 5 (.1) Lus10042680 [exp] 58 / 6e-11 AT1G03430 142 / 2e-43 histidine-containing phosphotransfer factor 5 (.1) Lus10027965 [exp] 45 / 1e-06 AT1G03430 119 / 2e-35 histidine-containing phosphotransfer factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01627 [poplar] [flax] Hpt Hpt domain
Representative CDS sequence Show only first row Show all	>Potri.001G464900.1 pacid=42789056 polypeptide=Potri.001G464900.1.p locus=Potri.001G464900 ID=Potri.001G464900.1.v4.1 annot-version=v4.1 ATGGCTAGCACTCCCTTGCGCCAACAACTTAGCATCATGAGGCAATCATTCTTTGACGAGGGACTTCTGGATCAAGGACAAGTGAGTTATCTTGAGACTC TTGAAAATGAAGATGATCCTGACTTCATTGAAAATGTTTTTACCATGTTTTTAAGGGATTCATCTAGATATATTGCTTCTATCGAGAAGGCTTTGGAGAC AACCCCAGTTGATCGTCTCGTCATGGAAAGAATGATGTATCGACTTAAGGGTAGCAGTGCTAGCATTGGCGCGTCAAAAATCAATGATGAGAACAATAAA CTCAGAAAACTTTTCCATGAAGGGGATTTGGAAAGTGGCAAGGCAGCTCTCCAAAAACTGAAGGCAGAACATGTCAATTTCAAGGAAAAACTTTCTGTTT ATGTCGGGATGTTGAAGCAAGCCAAGCTCTCTGAATATTGA
AA sequence Show only first row Show all	>Potri.001G464900.1 pacid=42789056 polypeptide=Potri.001G464900.1.p locus=Potri.001G464900 ID=Potri.001G464900.1.v4.1 annot-version=v4.1 MASTPLRQQLSIMRQSFFDEGLLDQGQVSYLETLENEDDPDFIENVFTMFLRDSSRYIASIEKALETTPVDRLVMERMMYRLKGSSASIGASKINDENNK LRKLFHEGDLESGKAALQKLKAEHVNFKEKLSVYVGMLKQAKLSEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Potri.001G464900 [exp]	0	1
					Potri.001G386550 [exp]	7.54	0.9904
AT1G28640			GDSL-like Lipase/Acylhydrolase...		Potri.004G225100 [exp]	8.66	0.7953
AT1G43760			DNAse I-like superfamily prote...		Potri.012G063901 [exp]	10.39	0.7682
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.012G113433 [exp]	10.67	0.9904
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Potri.001G043900 [exp]	12.44	0.7284	CNGC7.1
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.012G114266 [exp]	21.00	0.8598
AT3G24225		ESR19, CLE19, A...	EMBRYO SURROUNDING REGION 19, ...		Potri.001G016100 [exp]	22.49	0.8133
AT3G48420			Haloacid dehalogenase-like hyd...		Potri.014G003916 [exp]	23.66	0.7518
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.012G112800 [exp]	36.87	0.6854
					Potri.002G113501 [exp]	42.57	0.5716

Compare expression of checked genes

Potri.001G464900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.