Plant FIBer expression Database

Potri.001G465300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63890 790 / 0 HISN8, ATHDH HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G163400
[exp]
925 / 0 AT5G63890 790 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035112
[exp]
815 / 0 AT5G63890 775 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2)
Lus10031985
[exp]
791 / 0 AT5G63890 752 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0099 ALDH-like PF00815 Histidinol_dh Histidinol dehydrogenase
Representative CDS sequence
>Potri.001G465300.1 pacid=42789761 polypeptide=Potri.001G465300.1.p locus=Potri.001G465300 ID=Potri.001G465300.1.v4.1 annot-version=v4.1
ATGGACTCCCAGCTTCTGTTACTTAACAATAACAACTCATTAACAAAGCTTCCACAATTCAGTTTCTTTGCTTCTCCGAAACCCAGATACAACCCATCTT
CTAATTTCTTGGGGTTTAAGTTGAAGAGAGTAATGTGTGCAATGAAGTCTTATAGGTTGTCAGAACTTAATAATTCAGAGGTTGAGAGTTTGAAAGCTCG
GCCTCGTATTGATTTTTCTTCCATTTTTGGAATTGTTAATCCTATTGTTGATGATGTTCGTCAAAGAGGTGATGCTGCAGTTAAAGATTATACTTCAAGA
TTTGACAAAGTCAAATTAGACAAGATCGTCGAGAATGTTTCTGAGCTTCCTGATCCGGAGCTTGATGCAACTGTTAAAGAAGCTTTTGATGTGGCGTATA
ACAACATATATGCATTTCATCTTGCTCAAAAATCAGTTGAAAAAAGTGTTGAAACCATGAAGGGTGTTAGATGCAAACGTGTGGCTCGAAGCATTAGTTC
TGTAGGTCTTTATGTACCAGGGGGGACTGCAGTTTTGCCATCCACAGCTCTGATGCTTGCTATTCCTGCACAAATTGCTGGGTGTAAAACTGTTGTCCTT
GCGACTCCCCCAGCTCAGGATGGCAGCATATGCAAGGAGGTACTGTATTGTGCCAAGAAGGCTGGTGTCACTCACATCCTTAAAGCTGGTGGAGCTCAGG
CCATATCTGCAATGGCTTGGGGAACAGAATCTTGCCCTAAGGCTGAGAAGATTTTTGGACCAGGAAATCAGTATGTGACAGCTGCAAAAATGATTCTCCA
AAACAGTGAAGCAATGATTTCAATTGACATGCCAGCCGGGCCTTCTGAAGTTTTAGTCATTGCTGACAGATATGCTAGTCCTGTTCATATAGCTGCAGAT
TTACTATCCCAGGCTGAACATGGCCCTGACAGTCAGGTTGTTCTTGTAGTTGCTGGGGATGGTGTGGATATGAAAGCCATTGAAGAGGAAATAAGTAAGC
AGTGTCAAAGCCTACCAAGGGGTGAATATGCTTCAAAAGCCCTGAGCCACAGTTTTACTGTCTTTGCTCGTGACATGGTTGAGGCTGTCTCCTTTTCAAA
CTTGTATGCACCTGAGCATCTGATCATTAATGTAAAAGAAGCAGAAAAGTGGGAGAGCTTTATTGAGAATGCAGGTTCTGTGTTCCTGGGTCCGTGGACA
CCAGAGAGTGTTGGGGATTATGCCAGTGGGACAAATCATGTCCTTCCAACATATGGATATGCACGGATGTATGGTGGGGTATCCTTGGACTCTTTCCAGA
AATACATGACGGTGCAGTCTTTGACAGAGGAAGGTCTTAGAAAGCTCGGCCCATATGTGGCAACCATGGCAGAAGTTGAAGGGCTGGACGCCCACAAGAG
AGCTGTAACTCTTAGACTTCAGGATATTGAAGCCAGACAGGTTTCCAATACGAGATAG
AA sequence
>Potri.001G465300.1 pacid=42789761 polypeptide=Potri.001G465300.1.p locus=Potri.001G465300 ID=Potri.001G465300.1.v4.1 annot-version=v4.1
MDSQLLLLNNNNSLTKLPQFSFFASPKPRYNPSSNFLGFKLKRVMCAMKSYRLSELNNSEVESLKARPRIDFSSIFGIVNPIVDDVRQRGDAAVKDYTSR
FDKVKLDKIVENVSELPDPELDATVKEAFDVAYNNIYAFHLAQKSVEKSVETMKGVRCKRVARSISSVGLYVPGGTAVLPSTALMLAIPAQIAGCKTVVL
ATPPAQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKAEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADRYASPVHIAAD
LLSQAEHGPDSQVVLVVAGDGVDMKAIEEEISKQCQSLPRGEYASKALSHSFTVFARDMVEAVSFSNLYAPEHLIINVKEAEKWESFIENAGSVFLGPWT
PESVGDYASGTNHVLPTYGYARMYGGVSLDSFQKYMTVQSLTEEGLRKLGPYVATMAEVEGLDAHKRAVTLRLQDIEARQVSNTR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63890 HISN8, ATHDH HISTIDINE BIOSYNTHESIS 8, hist... Potri.001G465300
[exp]
0 1
AT4G26300 EMB1027 embryo defective 1027, Arginyl... Potri.002G198500
[exp]
2.00 0.8021
AT2G33340 MAC3B MOS4-associated complex 3B (.... Potri.008G171600
[exp]
6.92 0.7802
AT5G11880 Pyridoxal-dependent decarboxyl... Potri.009G119300
[exp]
8.83 0.7852
AT4G22930 PYR4, DHOASE DIHYDROOROTASE, pyrimidin 4 (.... Potri.007G139700
[exp]
8.94 0.7941
AT4G33680 AGD2 ABERRANT GROWTH AND DEATH 2, P... Potri.009G082100
[exp]
9.48 0.7753
AT1G14300 ARM repeat superfamily protein... Potri.019G092000
[exp]
14.49 0.7228
AT3G63410 VTE3, APG1, IEP... VITAMIN E DEFECTIVE 3, INNER E... Potri.005G215900
[exp]
15.87 0.7897
AT4G02405 S-adenosyl-L-methionine-depend... Potri.002G203900
[exp]
15.96 0.7484
AT3G51140 Protein of unknown function (D... Potri.007G015600
[exp]
15.96 0.7888
AT4G00620 EMB3127 EMBRYO DEFECTIVE 3127, Amino a... Potri.002G157100
[exp]
19.49 0.7711

Potri.001G465300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.