Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20900 338 / 9e-109 TDM1, MS5 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44330 308 / 3e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G51280 295 / 1e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48850 278 / 5e-88 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04770 262 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G22794 77 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163500 [exp] 1044 / 0 AT4G20900 328 / 1e-105 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G056500 [exp] 310 / 2e-97 AT3G51280 603 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G112100 [exp] 305 / 8e-96 AT3G51280 595 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G177600 [exp] 287 / 1e-91 AT1G04770 384 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G240700 [exp] 276 / 6e-87 AT5G48850 404 / 9e-143 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G050600 [exp] 274 / 2e-86 AT1G04770 381 / 6e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G033201 [exp] 0 / 1 AT1G04770 53 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023256 [exp] 416 / 6e-138 AT4G20900 330 / 4e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008852 [exp] 402 / 1e-132 AT4G20900 311 / 7e-101 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028434 [exp] 298 / 2e-93 AT3G51280 560 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028433 [exp] 298 / 3e-93 AT3G51280 569 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041887 [exp] 298 / 7e-93 AT3G51280 572 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041886 [exp] 297 / 1e-92 AT3G51280 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000753 [exp] 268 / 4e-84 AT1G04770 391 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011738 [exp] 263 / 7e-82 AT1G04770 389 / 1e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011872 [exp] 258 / 3e-80 AT5G48850 392 / 2e-138 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022806 [exp] 256 / 3e-74 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.001G465401.1 pacid=42791470 polypeptide=Potri.001G465401.1.p locus=Potri.001G465401 ID=Potri.001G465401.1.v4.1 annot-version=v4.1 ATGTGGTCTCATAACAACAACGACAAGAATTCTCCGGCAAGGGGATTCTGGACACCGCCGGCTTCATGGAGGTCTCAACATTCTCCGGCGGTTGCCATGA TGCCAATGTCAGAGAGGAAAGAAAGGGTGTCTTCTCCTAGTTGTAAACGTGATATTTTTCATGTTATTCATAAAGTCCCTGCCGGTGATTCTCCTTATGT CAGAGCCAAACATGTCCAGTTAATAGAGAAGGATCCAAGCAAGGCTGTTTCCCTATTCTGGGCTGCTATCAATTCTGGGGATCGAGTTGATAGTGCCTTG AAAGACATGGCAGTGGTGATGAAGCAATTGGATCGAGCTGATGAGGCAATTGAGGCGATCAAATCCTTTCGTCATCTCTGTCCCTATGATTCCCAGGAAT CTATTGACAATGTGCTAGTTGAACTCTACAAGAGATCTGGAAGGATTGAAGAAGAGATTGAAATGCTTCAACGCAAACTGAAGAACATAGAAGAGGGTAT CGCTTTTTCTGGCAAGAAGACAAAGACTGCCAGATCCCAAGGGAGGAAGATTCAAATAACTGTTGAACAAGAAAGATCAAGGATATTAGGGAATTTGGCG TGGGCTTACTTGCAGCATCACGATTATGGTTTGGCTGAACAATATTACAGGAAAGGTCTATCAATGGAGCCAGATCAGAATAAGCAGTGCAACTTGGCTA TCTGCTTGATGCACATGAACAGAATTCCAGAAGCAAAATCTCTGCTTCAAACCGTAAAAGCTTCATCTGGAAGTAAACCAATGGATGATTCCTATGCTAA ATCTTTCGAGCGTGCTTGTCAAATCCTGACTGAATTAGAGTCACATTTAATAGTTAAACCAACCGAACAAGATGAAAAAGTTCACCGAAGGTCATTGGCA TTGCCTACCACCAGAAATTTGAAAGAGGTTGCTAGCTCCCGGAATGGAGATGTTTCGGGATTTGTGGACTCTAGAAAGTGCACAGGTGTAGTTAAACCAA CCGAACAAGATGAAAAAGTTCACCAAAGGTCTTTGGCATTGCCTACCACCAGAAATTTGAAAGAGGTTGCTAGCTCCCGGAATGGAGATGTTTCGGGATT CGTGGACTCTAGAAAGTGCACAGGTGTATTTAATGAAGATAGAGTGCTGTCAGATGAACATAATAGAAGATCTTATTGGCAGAATCACTCTGAGAATGAG AAAAGCTTCTTTGCATCCAATAATAGGAGTTCTCAATGTATATCACCTGGACTGAGAGGCGGTCCACAGTCTTCTCCACAAACTGCAGTTGACAATAGCT GGAGGAGAGATTCTAGTTTTGCAAGCCCAGGTGAAAGGCTTGGTTTTGCCAGCAAAATGAAGGATTATCGGTTTAGTTTTGCTGAAATAGGCCCAAGTTC AGAACAGAAGAAGACATTTACATCTCCAGCCATACATACACAACCAAGGAGATGTTGCTGGGGGTTCGATAAAGGAGATCAGAGAAGGATAAGGTGGGGA GAGGATACAGCTGAGATAGAAAAAGAGAATGCAATCCGGAATCTCTCTGGAGAACTATTAGACTTAACTGATAATCATACAAGCTGGAAAAGAAATGGTC AGGAAAATGGTCGCCAAAGGAAATCTGCAACAGAAGACAGGAACACAAGTCTAAAGTGTTCCACAGAGCAGACCGTGGTTATTGACAATGCAGGGGTATC AAAAGCCTCCACTGATTGTGACTGGGATCAATCAGCAGAAACTGTTGGAAATAAGTATCTTGGAAAGGACAGCTCACTCAAATCCCATCGCAAGAGTTGG GCAGATATGGTTGAAGAAGAAGAAGAAGAACTGGACCTGTTAACTACAGACCTTGGCCAGAGTTTCCATAGTTGGAATTATGAAGACGCATGCAGTGATG AAAATCTAAATGTCAACACATTTCATCAGAATTCTTACCAAAAGAATCAGCTAGGAACTATTTTTCGAAAACTTGAAGCAGCTGATCTTCAAGATGGCTA TGGTACATCCATGAATGCAGTTTCATCAAGGAATTCCACAGCGCGACGCTCACTGTCTTACGAATCTGCAGAGGATGTGAATACAAAGAGGAGAAACAGG TTGCAGGTTTTCCGAGACATAACTCCAACTCCAGATAGTCCATGA
AA sequence Show only first row Show all	>Potri.001G465401.1 pacid=42791470 polypeptide=Potri.001G465401.1.p locus=Potri.001G465401 ID=Potri.001G465401.1.v4.1 annot-version=v4.1 MWSHNNNDKNSPARGFWTPPASWRSQHSPAVAMMPMSERKERVSSPSCKRDIFHVIHKVPAGDSPYVRAKHVQLIEKDPSKAVSLFWAAINSGDRVDSAL KDMAVVMKQLDRADEAIEAIKSFRHLCPYDSQESIDNVLVELYKRSGRIEEEIEMLQRKLKNIEEGIAFSGKKTKTARSQGRKIQITVEQERSRILGNLA WAYLQHHDYGLAEQYYRKGLSMEPDQNKQCNLAICLMHMNRIPEAKSLLQTVKASSGSKPMDDSYAKSFERACQILTELESHLIVKPTEQDEKVHRRSLA LPTTRNLKEVASSRNGDVSGFVDSRKCTGVVKPTEQDEKVHQRSLALPTTRNLKEVASSRNGDVSGFVDSRKCTGVFNEDRVLSDEHNRRSYWQNHSENE KSFFASNNRSSQCISPGLRGGPQSSPQTAVDNSWRRDSSFASPGERLGFASKMKDYRFSFAEIGPSSEQKKTFTSPAIHTQPRRCCWGFDKGDQRRIRWG EDTAEIEKENAIRNLSGELLDLTDNHTSWKRNGQENGRQRKSATEDRNTSLKCSTEQTVVIDNAGVSKASTDCDWDQSAETVGNKYLGKDSSLKSHRKSW ADMVEEEEEELDLLTTDLGQSFHSWNYEDACSDENLNVNTFHQNSYQKNQLGTIFRKLEAADLQDGYGTSMNAVSSRNSTARRSLSYESAEDVNTKRRNR LQVFRDITPTPDSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20900		TDM1, MS5	MALE-STERILE 5, Tetratricopept...		Potri.001G465401 [exp]	0	1
AT4G20900		TDM1, MS5	MALE-STERILE 5, Tetratricopept...		Potri.011G163500 [exp]	1.73	0.9619
AT1G23790			Plant protein of unknown funct...		Potri.008G192300 [exp]	4.89	0.9525
AT1G31335			unknown protein		Potri.001G082332 [exp]	5.47	0.9459
AT4G02800			unknown protein		Potri.005G209400 [exp]	9.05	0.9544
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.002G224600 [exp]	10.81	0.9468
AT2G33400			unknown protein		Potri.010G067300 [exp]	11.31	0.9532
AT1G04030			unknown protein		Potri.002G258501 [exp]	12.64	0.9525
AT3G12110		ACT11	actin-11 (.1)		Potri.006G192700 [exp]	13.41	0.9370	Pt-ACT2.4
AT1G20070			unknown protein		Potri.005G241800 [exp]	13.60	0.9268
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Potri.002G235500 [exp]	16.49	0.9401	PAKRP1.2

Compare expression of checked genes

Potri.001G465401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.