Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20940 915 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G10020 381 / 1e-115 Leucine-rich receptor-like protein kinase family protein (.1.2) AT2G27060 321 / 2e-93 Leucine-rich repeat protein kinase family protein (.1) AT3G51740 203 / 6e-54 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT3G56370 195 / 4e-51 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 184 / 2e-48 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 172 / 2e-44 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 169 / 1e-43 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G67510 167 / 2e-42 Leucine-rich repeat protein kinase family protein (.1) AT3G24660 164 / 7e-42 TMKL1 transmembrane kinase-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163700 [exp] 1675 / 0 AT4G20940 946 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G083000 [exp] 379 / 2e-114 AT5G10020 1140 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.004G197500 [exp] 367 / 1e-110 AT2G27060 1053 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G082800 [exp] 365 / 4e-109 AT5G10020 1132 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.009G159101 [exp] 206 / 6e-61 AT2G27060 214 / 2e-64 Leucine-rich repeat protein kinase family protein (.1) Potri.010G183400 [exp] 216 / 4e-58 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.016G126300 [exp] 214 / 2e-57 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G104300 [exp] 213 / 2e-57 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.013G091000 [exp] 191 / 9e-50 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038544 [exp] 1394 / 0 AT4G20940 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10023260 [exp] 710 / 0 AT4G20940 704 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10026756 [exp] 343 / 2e-101 AT2G27060 961 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025541 [exp] 341 / 1e-100 AT2G27060 958 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022679 [exp] 212 / 4e-57 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10012225 [exp] 207 / 2e-56 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014235 [exp] 206 / 3e-55 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 204 / 2e-54 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 203 / 3e-54 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10017756 [exp] 180 / 4e-47 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G465800.1 pacid=42792586 polypeptide=Potri.001G465800.1.p locus=Potri.001G465800 ID=Potri.001G465800.1.v4.1 annot-version=v4.1 ATGAAGCTCTTAAGGCTTTTACTGTTATCCCTATTTTTCCTTTCTGCCATGGGGCAATTGCCTTCACAGGACATATTGGCATTGCTTGAATTCAAGAAGG GTATCAAGCATGACCCCACTGGTTATGTTCTTGAGTCATGGAATGAGGAGTCCGTTGATTTTGGTGGCTGCCCTTCTTCTTGGAATGGCATTGTCTGCAA TGGTGAAAATGTTGCTGGGGTTGTTCTTGATAACTTGGGTCTCTCGGCTGATGTAGATTTGAGTGTGTTTGCAAATCTTACATTGCTTGCCAAACTCTCC ATGGCAAACAACTCTATAACTGGCAAGATTCCAGACAATGTAGGTGACTTTAAAAGCCTTCTGTTTATGGATGTGTCGAACAATCTGTTTTCGTCATCAT TACCACCAGGGATTGGTAAATTAGGGAGATTAAGGAACCTCTCGTTGGCTGGGAACAACTTCTCTGGCTCACTTCCAGATTCAATTTCAGGGTTTGCATC TATCCAGTCGTTGGACTTGAGCCGCAACTCGTTTTCTGGATCATTGCCAATGTCATTGACAAGGCTGAATAACCTGGTATATCTGAATCTGTCTTCCAAT GGGTTTACCAAGATGATTCCAAAGGGATTTGAGCTGATTTCAAGTCTACAGGTGCTTGACTTGCATGAGAATATGTTTGATGGTCATCTAGATGGGATGT TTTTTCTTGAAACCAATGCTAGTCATGTTGATCTCAGTGGAAATATGCTAGTGAGCTCTAGTTCTCAGAGATTACTTCCGGGTATGTCTGAGAGCATTAA GCTTTTGAATCTTAGCCACAACCAGCTTAGTGGGTCACTGCTAAATGGAGGTGACATGCAATTGTTTGCAAGTGTAAAGGTGTTGGATTTAAGCTACAAT CAGTTGTCAGGAGAATTGCCAGGATTTGATTTTGCTTATGAGCTTCAGGTCCTTAGGCTCAGCAACAACAAATTCTCCGGGTATATTCCTAATGACCTAT TGAAAGGAGATTCTTTGCTCTTAAATGAACTGGATTTGAGTGCCAATAATCTCTCAGGGCCAATAAGCATGATTATGTCAACAACACTTCGTGTCCTTGA TCTATCATCAAATGTGCTTGTCGGGGAACTTCCTTTGGTGACGGGAAGCTGTGCTGTGCTTGATCTATCAAACAACAGATTTGAAGGAAATTTAACCCGA ATGGTGAAGTGGGGGGACATTGAATATCTTGATCTAAGCCAGAATCATTTGACAGGGCCAATCCCTGAAATAGCTCCACAATTTTTGCGTTTGAATTATC TCAACCTCTCTCATAATTCACTTACCAGCTCTCTCCCAAAAGTTATCACTCAGTATCCAAAGCTTAGAGTCCTAGATCTTAGTTCGAACCAGCTAGGTGG ATCTATGTTAACTGATTTACTAATGTCGCCTACTTTGCAAGAAATCCACCTTGAAAAAAATTTACTCGATGGTTCTATTTTATTCTCTCCCCCTTCCAAT AGTAAATCCAATCTTCAAGTTATTGATCTTTCTCATAATCAGCTTGATGGCTATTTTCCTGATCGTTTTGAATCACTTGCTGGTCTTCAAGTGCTCAATC TTTCAGGGAATAATTTATCCGGTTCCCTTCCAAGTTCCATGGCTGACATGAGCTCGCTTATTTCATTAGACTTATCTCAAAACCATTTCACAGGTCCTCT GCCAAACAACTTGTCAGAGAGCATAGGCAGCTTTAATGTTTCATATAATGATCTTTCTGGGGTTGTCCCAGAAAACCTGAGGAGGTTTCCATCTTCTTCT TTCTATCCTGGAAATAACAGATTAAGCCTTCCAAATGGTCCTCCTGGACCAAACAATCTTCCTGGTGGAAATCGTGGGGGGAAACCAATCAACACCATTG TCAAGGTGGTAGTCATTGTTGCATGTGTGACTGCACTGATCATTCTTATCATGCTTGCCATCTTCATACTTTACATTCGTATAAGAAGGAGAAATCCACC AGGTCAAGTTACAAATACAGGTATCCGTAGGCACATTCAAACAAACCCCTCTGGCACTAGTGGAACAGGCAAAGCTGGTGCGTTGGTTGTTTCAGCTGAG GATCTTGTGACGTCGAAGAAAGGATCATCATCTGAGATTATCAGCCCTGATGAGAAAATGGCTGCAGTAACTGGCTTCTCACCAACAAAACACAGCCATT TATCTTGGTCACCACAGTCTGGCGATTCATTTGCTGCTGAAACCCTTGCACGACTGGATGTAGGGTCACCGGACCGGTTGGTTGGTGAGCTGTACTTTCT TGATGATACAATCACAATGACACCAGAGGAGCTGTCAAGGGCTCCAGCTGAAGTGTTGGGTAGGAGCAGTCATGGGACTTCTTACAGGGCAACACTGGAT AATGGGGTCTTCATTACTGTGAAATGGTTGAGAGAAGGGGTGGCAAAACAAAGAAAGGAGTTTGCCAAGGAGGCCAAAAAATTTACAAACATCAGGCATC CAAATGTGGTAGGTTTGAGAGGATACTACTGGGGCCCCACACAGCATGAGAAACTCATTCTTTCGGATTACATCTCACCTGGAAGCCTTGCAAGCTTTCT CTATGATCGACCGGGAAGAAAAGGCCCCCCATTAACTTGGGTTCAGAGGCTCAAGATAGCAGTTGATGTTGCACGTGGCCTGAACTATCTCCATTTTGAC CGTGCTGTTCCACATGGGAACCTTAAAGCAACAAACATACTTCTGGATGGGCCTGATCTCAATGCACGTGTTGCTGATTACTGCCTCCATCGACTCATGA CTCAAGCCGGCACCATTGAACAGATACTTGATGCTGGGGTCCTGGGTTATCGCGCACCAGAGTTGGCTGCTTCCAAGAAGCCACTTCCCTCCTTCAAGTC AGATGTTTATGCCTTTGGAATGATAATGTTGGAACTTTTAACTGGAAGGTGTGCAGGTGATGTGATTTCTGGGGAAGGGGGGAGTGTTGACTTGACAGAT TGGGTGCGGTTGAGAGCAATGGATTGCTTTGATCCCGCACTGGTGCCGGAGATGGTGAATCCGGCGGTTGACAAGGGAATGAAGGAGGTCCTTGGAATAG CTTTAAGATGTATAAGGTCTGTCTCCGACAGGCCAGGCATCAAGACCATATATGAAGATCTTTCGTCGATATAG
AA sequence Show only first row Show all	>Potri.001G465800.1 pacid=42792586 polypeptide=Potri.001G465800.1.p locus=Potri.001G465800 ID=Potri.001G465800.1.v4.1 annot-version=v4.1 MKLLRLLLLSLFFLSAMGQLPSQDILALLEFKKGIKHDPTGYVLESWNEESVDFGGCPSSWNGIVCNGENVAGVVLDNLGLSADVDLSVFANLTLLAKLS MANNSITGKIPDNVGDFKSLLFMDVSNNLFSSSLPPGIGKLGRLRNLSLAGNNFSGSLPDSISGFASIQSLDLSRNSFSGSLPMSLTRLNNLVYLNLSSN GFTKMIPKGFELISSLQVLDLHENMFDGHLDGMFFLETNASHVDLSGNMLVSSSSQRLLPGMSESIKLLNLSHNQLSGSLLNGGDMQLFASVKVLDLSYN QLSGELPGFDFAYELQVLRLSNNKFSGYIPNDLLKGDSLLLNELDLSANNLSGPISMIMSTTLRVLDLSSNVLVGELPLVTGSCAVLDLSNNRFEGNLTR MVKWGDIEYLDLSQNHLTGPIPEIAPQFLRLNYLNLSHNSLTSSLPKVITQYPKLRVLDLSSNQLGGSMLTDLLMSPTLQEIHLEKNLLDGSILFSPPSN SKSNLQVIDLSHNQLDGYFPDRFESLAGLQVLNLSGNNLSGSLPSSMADMSSLISLDLSQNHFTGPLPNNLSESIGSFNVSYNDLSGVVPENLRRFPSSS FYPGNNRLSLPNGPPGPNNLPGGNRGGKPINTIVKVVVIVACVTALIILIMLAIFILYIRIRRRNPPGQVTNTGIRRHIQTNPSGTSGTGKAGALVVSAE DLVTSKKGSSSEIISPDEKMAAVTGFSPTKHSHLSWSPQSGDSFAAETLARLDVGSPDRLVGELYFLDDTITMTPEELSRAPAEVLGRSSHGTSYRATLD NGVFITVKWLREGVAKQRKEFAKEAKKFTNIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWVQRLKIAVDVARGLNYLHFD RAVPHGNLKATNILLDGPDLNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPLPSFKSDVYAFGMIMLELLTGRCAGDVISGEGGSVDLTD WVRLRAMDCFDPALVPEMVNPAVDKGMKEVLGIALRCIRSVSDRPGIKTIYEDLSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20940			Leucine-rich receptor-like pro...		Potri.001G465800 [exp]	0	1
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.016G070500 [exp]	1.41	0.8895
AT5G28150			Plant protein of unknown funct...		Potri.005G050900 [exp]	1.41	0.8913
AT4G31890			ARM repeat superfamily protein...		Potri.006G263100 [exp]	2.44	0.8723
AT5G17600			RING/U-box superfamily protein...		Potri.003G093100 [exp]	2.44	0.8800
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Potri.017G081100 [exp]	2.82	0.8784
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.003G204500 [exp]	5.47	0.8524
AT1G73620			Pathogenesis-related thaumatin...		Potri.012G047800 [exp]	6.32	0.8603
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G073925 [exp]	7.74	0.8775
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.014G158400 [exp]	12.40	0.8723
AT3G25700			Eukaryotic aspartyl protease f...		Potri.008G115900 [exp]	12.72	0.8666

Compare expression of checked genes

Potri.001G465800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.