Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30580 681 / 0 GTP binding (.1) AT1G56050 252 / 5e-80 GTP-binding protein-related (.1) AT1G07615 65 / 3e-11 GTP-binding protein Obg/CgtA (.1) AT5G18570 64 / 1e-10 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G72660 49 / 5e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G39520 47 / 1e-05 GTP-binding protein-related (.1) AT1G17470 47 / 1e-05 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT5G57960 43 / 0.0003 GTP-binding protein, HflX (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164000 [exp] 740 / 0 AT1G30580 691 / 0.0 GTP binding (.1) Potri.001G457900 [exp] 249 / 1e-78 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.011G143700 [exp] 99 / 3e-23 AT1G56050 357 / 1e-122 GTP-binding protein-related (.1) Potri.002G029600 [exp] 72 / 2e-13 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.010G022400 [exp] 64 / 1e-10 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G239600 [exp] 62 / 2e-10 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.003G063500 [exp] 48 / 6e-06 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.007G080900 [exp] 48 / 7e-06 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.001G170300 [exp] 48 / 8e-06 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038543 [exp] 711 / 0 AT1G30580 713 / 0.0 GTP binding (.1) Lus10023261 [exp] 710 / 0 AT1G30580 711 / 0.0 GTP binding (.1) Lus10031209 [exp] 221 / 2e-68 AT1G56050 630 / 0.0 GTP-binding protein-related (.1) Lus10031789 [exp] 214 / 1e-65 AT1G56050 626 / 0.0 GTP-binding protein-related (.1) Lus10024297 [exp] 71 / 5e-13 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10034166 [exp] 65 / 5e-11 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 64 / 9e-11 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 62 / 3e-10 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10040813 [exp] 61 / 8e-10 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1) Lus10037676 [exp] 48 / 7e-06 AT1G72660 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0072 [poplar] [flax] Ubiquitin PF06071 [poplar] [flax] YchF-GTPase_C Protein of unknown function (DUF933)
Representative CDS sequence Show only first row Show all	>Potri.001G465900.1 pacid=42789975 polypeptide=Potri.001G465900.1.p locus=Potri.001G465900 ID=Potri.001G465900.1.v4.1 annot-version=v4.1 ATGCCGCCAAAAGCATCAAAATCGAAAGAAGCACCGTCTGAGAGACCGATTCTTGGACGATTCTCTTCTCACCTCAAGATCGGCATTGTTGGATTGCCGA ATGTAGGTAAATCGACCCTTTTTAATACGCTGACAAAGATGTCAATACCAGCTGAGAATTTCCCGTTTTGCACTATTGAACCTAATGAGGCTAGGGTTAA TATTCCTGATGAGAGATTTGAGTGGCTTTGCCAGCTGTTCAAGCCGAAAAGCGAGGTTTCAGCATTCTTGGAAATTCATGATATTGCTGGATTGGTTAGA GGTGCACATGCAGGTCAAGGGCTGGGAAACAGTTTCTTGTCTCATATCCGTGCTGTTGATGGAATTTTTCATGTTTTGCGAGCTTTCGAGGATCCAGATA TTATCCATGTTGATGACATTGTGGATCCGGTTAGAGATCTCGAGGTTATTAGTGCGGAGCTCAGACTGAAGGATATAGAGTTCATTGAAAGGAGGATAGA GGATGTTGAAAAGAGCATGAAGAGGAGCAATGATAAGCAGTTGAAAATAGAAATGGAGATGTGTCAAAGGGTCAAGGCATGGCTTGAGGAAGAGAAAGAT GTACGTTTAGGAGATTGGAAAGCTGCTGATATTGAGATATTGAATACTTTTCAGCTGCTTACTGCCAAGCCTGTCGTTTACCTGGTTAACATGAATGAAA GGGATTACCAAAGAAAAAAGAACAAATTTTTGCCCAAGATTCACACATGGGTACAGGAACATGGGGGTGAAACCATTATTCCTTTCAGCTGCATCTTAGA GAGAAATCTTGCTGATATGCTACCGCATGAAGCAGATAAATATTGTGAGGAGAACAAGGTACAAAGTGCCCTTTCGAAGATCATAAAGACTGGATTTTCA GCAATTAATCTCATATACTTTTTCACTGCTGGCCCTGACGAGGTGAAATGTTGGCAGATCAGACGACAGACAAAGGCCCCTCAAGCTGCTGGGACAATCC ATACTGATTTTGAGAGAGGATTTATATGTGCTGAGGTCATGAAATTTGATGATCTAAAGGAGCTTGGTAGCGAGTCAGCTGTTAAGGCTGGTGGGAAGTA TAAGCAGGAGGGAAAGACATATGTTGTCCAAGATGGAGACATAATATTCTTCAAGTTCAACGTGTCCGGGGGTGGAAAGAAGTAA
AA sequence Show only first row Show all	>Potri.001G465900.1 pacid=42789975 polypeptide=Potri.001G465900.1.p locus=Potri.001G465900 ID=Potri.001G465900.1.v4.1 annot-version=v4.1 MPPKASKSKEAPSERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKMSIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSEVSAFLEIHDIAGLVR GAHAGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDIVDPVRDLEVISAELRLKDIEFIERRIEDVEKSMKRSNDKQLKIEMEMCQRVKAWLEEEKD VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNERDYQRKKNKFLPKIHTWVQEHGGETIIPFSCILERNLADMLPHEADKYCEENKVQSALSKIIKTGFS AINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSESAVKAGGKYKQEGKTYVVQDGDIIFFKFNVSGGGKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30580			GTP binding (.1)		Potri.001G465900 [exp]	0	1
AT5G40770		ATPHB3	prohibitin 3 (.1)		Potri.001G335700 [exp]	2.64	0.8348	Pt-PHB3.2
AT5G50890			alpha/beta-Hydrolases superfam...		Potri.002G058100 [exp]	8.00	0.7332
AT1G07070			Ribosomal protein L35Ae family...		Potri.010G194200 [exp]	15.09	0.8118
AT5G27430			Signal peptidase subunit (.1)		Potri.005G036200 [exp]	17.14	0.7946	Pt-SPP.1
AT2G44860			Ribosomal protein L24e family ...		Potri.004G187800 [exp]	18.16	0.7827
AT5G28060			Ribosomal protein S24e family ...		Potri.013G036100 [exp]	19.67	0.7883	Pt-RPS24.2
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.014G197100 [exp]	21.44	0.8101
AT5G64670			Ribosomal protein L18e/L15 sup...		Potri.016G002400 [exp]	22.91	0.7627
AT3G59650			mitochondrial ribosomal protei...		Potri.013G126200 [exp]	24.71	0.7719
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.004G133800 [exp]	27.16	0.7279

Compare expression of checked genes

Potri.001G465900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.