Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33990 1067 / 0 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 621 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 578 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 575 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 573 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 557 / 0 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 554 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 548 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 533 / 7e-180 MEF22 mitochondrial editing factor 22 (.1) AT3G26782 527 / 5e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191000 [exp] 619 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 608 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 591 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 584 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 582 / 0 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 565 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 565 / 0 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G018700 [exp] 562 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 562 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019735 [exp] 1146 / 0 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016387 [exp] 756 / 0 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 635 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 578 / 0 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038400 [exp] 576 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 575 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 575 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 564 / 0 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 556 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 553 / 0 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.001G466066.1 pacid=42792377 polypeptide=Potri.001G466066.1.p locus=Potri.001G466066 ID=Potri.001G466066.1.v4.1 annot-version=v4.1 ATGAAAGGCTCAAGATTGGTGCCACCCTGCAAAAGAAGGCATCTTTCCAAACTTTTCTCATTGTTTCAATCCCATAGAACATTACATACGGCAACCGTCA CAGATTACTTACAAGTTACATCAGATGATCTTGAAAATGAGAGGAAAAGGATTGATTTCAATGCTTTATTCAAATCCTGCACAAAGTTGCAGCAGGTTAA ATGTGCTCATACACTTGTTGTGGTGTCAGGGAGATTTAAAGACAACTTCCTTTCCTCAAAGATTGTAAATTTGTATTCTCAGCATGGTGATGTTTCGTTA GCTTGGTGGACTTTTCACCACCTACCAAATAAAGATGTTTATACCTGGAATTCTATGGCATTTGCTTATGTTAGCCATGGTCGTTTCTGTGAAGCCTTGG GTTGTTTCAACCAGTTCTTTTCAACCTCTGGTCTTCGACCTGATTTTTACACTTTTCCTCCTGTGGTTAAAGCTTGTGGTGATCTGCTAGATGGGAAAAA GATACATTGCTTGGTTTTAAAGTTGGGTTTTGAATGGGATGTATTTGTAGCTGCTTCCCTGGTACATATGTATTCGCGATTTGGGCTTGTGGGGGATGCA AGAAAATTGTTTGATGATATGCCAGCTCGTGATAGAGGTTCATGGAATGCAATGATTTCTGGTTATTGTCAGAATGGGAATGCTGCAGAGGCATTGGATA TCGCAGATGAGATGAGATTGGAAGGGGTAAAAATGGATGCTATTACTGTTGCCAGTGTTCTTCCTGTTTGTGCACAAGTGGGTGATATTTTAAGTGGCAA GTTAATTCATTTGTATGTTATAAAGCATGGATTGGAATTTGAACTGTTTGTGTCTAATGCTTTGATTAACATGTATGCCAAATTTGGTAGCTTGGGGCAT GCGCAGAAAGTTTTTGGTCAGATGGTGGTAAGAGATATTGTATCATGGAACTCGATAATTGCTGCATATGAGCAAAACAACAATCCAGTTTCTGCTCATT TATTCTTTCATAAGATGCAAGAAGCTAGAGTTCAACCTGATTTGTTGACTCTAGTCAGTTTAGCTTCCATTGTTGCTCAACTAAATGATCATCAAAATAG CAGGTCTGTTCATGGATTTGTCATGAGGAAAGGTTGGTTCATGGAATATATTATCATTGGGAATGCGGTTGTGGATATGTATGCCAAAATTGGCAATTTA GATTCTGCGCGTGCAGTTTTTGGAGGACTCCTCATTAAAGATGTGGTTTCTTGGAATACTTTGATCACTGGTTATGCTCAAAATGGCCTTGCGAGTGAGG CAATTGAAGTATATCTTTTGATGGAAGAACACGAAGAGATAATCCCAAATCAAGGGACATGGGTAAGCATTCTACCAGCCTATTCCCATGTGGGAGCCTT GCAGCAAGGAATGAGAATTCATGGACAAGTTATTAAAAATTGTCTCTACTCAGATGTCTTTGTTGGCACATGCCTCATCGACATGTACGGTAAATGTGGA AAATTAGATGATGCAATATCATTATTCTACCAAGTACCTAGAAAAAATTCAGTCCCTTGGAATGCTATGATATCATGCTATGGAGTTCACGGGGATGGTG AGAAAGCTCTTGAGCTTTTTAGAGAGATGAAAGCTGAGAGAGTGAAGCCAGATCATATAACATTTGTATCGCTATTGTCAGCTTGTAGTCATTCAGGTTT GGTCAGTGATGCTCAGTGGTGCTTTAACATGATGGAGGAAGAGTATGGAATTAAGCCTAGTTTGAAGCACTATGGTTGCATGGTAGATTTATTTGGTAGA GCTGGGGAATTGGAAATGGCATTCAATTTTATAAAAAAAATGCCAATTCAGCCTGATGCTTCTGCATGGGGTGCCCTTCTCAATGCTTGCAGAATACATG GAAATATTGAGCTGGGTAAACATGCTTCTGAACGTTTGTTTGAAGTTGATTCAGAGAACGTTGGCTACTATGTATTGCTATCAAATATTTATGCAAACGT TGGGAAATGGGAAGGAGTGGATGATGTGAGATCACTAGCTAGAGATAGGGGATTGAGGAAGAATCCTGGATGGAGCTCAATCATATTGAACAACAAGGTC GACGTCTTCTACACTGGCAACCAAACTCATCCAAAATGTGAGGAGATATACAGGGAGTTGAGGGATTTGACTTCGAAAATAAAGACCATTGGTTATGTTC CAGATTTTTGCTTTGTGTTGCAAGATGTTGAAGAGGATGAGAAGGAGCACATCCTCATGGGCCATAGTGAGAGGCTGGCTATTGCTTATGGAATTATTAG CACCTCTCCTAAAACTCCTATCCGGATCTTCAAGAACTTGAGGGTCTGTGGTGATTGCCACACTGTAACAAAATTTATATCTATAATTACTGAGAGGGAA ATTATTGTGAGGGATTCCAGCCGGTTCCATCACTTCAAGGGAGGAACTTGCTCTTGTGGGGACTATTGGTAA
AA sequence Show only first row Show all	>Potri.001G466066.1 pacid=42792377 polypeptide=Potri.001G466066.1.p locus=Potri.001G466066 ID=Potri.001G466066.1.v4.1 annot-version=v4.1 MKGSRLVPPCKRRHLSKLFSLFQSHRTLHTATVTDYLQVTSDDLENERKRIDFNALFKSCTKLQQVKCAHTLVVVSGRFKDNFLSSKIVNLYSQHGDVSL AWWTFHHLPNKDVYTWNSMAFAYVSHGRFCEALGCFNQFFSTSGLRPDFYTFPPVVKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDA RKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGH AQKVFGQMVVRDIVSWNSIIAAYEQNNNPVSAHLFFHKMQEARVQPDLLTLVSLASIVAQLNDHQNSRSVHGFVMRKGWFMEYIIIGNAVVDMYAKIGNL DSARAVFGGLLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCG KLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGR AGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKV DVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIITERE IIVRDSSRFHHFKGGTCSCGDYW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.001G466066 [exp]	0	1
AT4G01200			Calcium-dependent lipid-bindin...		Potri.002G166400 [exp]	2.00	0.9104
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.014G106200 [exp]	2.23	0.8698	Pt-MTP1.1
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.012G014600 [exp]	2.82	0.8734
AT3G17490			F-box and associated interacti...		Potri.015G011000 [exp]	3.46	0.8673
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Potri.005G010900 [exp]	5.29	0.8338
AT5G63830			HIT-type Zinc finger family pr...		Potri.003G145100 [exp]	9.48	0.8979
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Potri.002G117800 [exp]	10.19	0.8518
AT5G53000		TAP46	2A phosphatase associated prot...		Potri.012G016500 [exp]	10.39	0.8867
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Potri.014G164900 [exp]	11.48	0.8386
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.009G156500 [exp]	13.78	0.8454

Compare expression of checked genes

Potri.001G466066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.