Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45600 328 / 3e-112 alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 278 / 1e-92 alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 255 / 1e-83 ATCXE20 carboxyesterase 20 (.1) AT1G68620 156 / 4e-45 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 152 / 3e-43 ATCXE17 carboxyesterase 17 (.1) AT5G06570 135 / 4e-37 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G23530 127 / 5e-34 ATCXE18 carboxyesterase 18 (.1) AT1G47480 122 / 4e-32 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 119 / 3e-31 alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 119 / 1e-30 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G466166 [exp] 654 / 0 AT2G45600 335 / 5e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466400 [exp] 649 / 0 AT2G45600 330 / 1e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466200 [exp] 631 / 0 AT2G45600 330 / 1e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G073000 [exp] 400 / 3e-140 AT2G45600 352 / 2e-121 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G073100 [exp] 370 / 3e-130 AT2G45600 175 / 8e-54 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G137100 [exp] 271 / 1e-89 AT5G62180 323 / 3e-110 carboxyesterase 20 (.1) Potri.002G150900 [exp] 249 / 2e-80 AT2G45610 320 / 3e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G113700 [exp] 166 / 1e-48 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.001G459400 [exp] 159 / 6e-46 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009308 [exp] 369 / 3e-128 AT2G45600 340 / 7e-117 alpha/beta-Hydrolases superfamily protein (.1) Lus10013774 [exp] 164 / 1e-47 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10002019 [exp] 153 / 6e-44 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10015989 [exp] 152 / 1e-43 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10039162 [exp] 152 / 2e-43 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10008439 [exp] 150 / 1e-42 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10002907 [exp] 146 / 4e-41 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10015988 [exp] 144 / 2e-40 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036168 [exp] 142 / 7e-40 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 146 / 1e-38 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF10340 [poplar] [flax] Say1_Mug180 Steryl acetyl hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G466300.1 pacid=42791516 polypeptide=Potri.001G466300.1.p locus=Potri.001G466300 ID=Potri.001G466300.1.v4.1 annot-version=v4.1 ATGTTAGCTTCCTCTGTCAAGTTAACAGATCTCTGCGATTTTGTGGAGAATCCAGATGGCTCACTCACTAGAAACAGCCCATTTCCTGACGTACCACCAA CAGAACAAATAACTCCAGGCTCCAAAGAACTTTCGCTCTCGAAAGACATCCCTCTAAACCCCAACAACAAAACATTTCTGCGTTTATTTCGCCCCCTAAA TCCCCCTCAAAACACCAGACTCCCTCTCATTATTTACTATCATGGAGGTGGCTTTGTTCTTTACAGCGCTGCAACTCTTGCTTTCCATCAAACATGCAGT GACATGGCTTCTCACTTCCCCGCTCTCGTCCTGTCTGTTGACTATCGTCTTGCCCCTGAACATCGCCTTCCCGCTGCATATCAAGATGCTATGGAGTCTA TCAAGTGGGTCCAAAACCAAGTTTTGGATATCAACGGCCCTTCTTGTGAACCTTGGTTTAAAGAATACCTTGATTTTTCAAGGTCTTTCTTGATGGGCAT GAGTGCTGGTGGCAACATTGCTTACCATGCAAACTTGCTTGCCTTGAATATTGATATCAAACCCTTGAAAATCATTGGTTTGATATTGAATGTCCCCTAT TTTTCTGCTGTCACCAGGACTGAATCAGAGAAGAGGTTGATCAATGATCCGGTTTTGCCATTGGCTACTAGTGATAGGATGTGGGCTCTGTCTTTGCCTG AAGATACCGATCGTGATCATGAGTATTGCAATCCCATTGTTGGCGGGTCTCTTGAAAAGAACAAAATCAAACGGCTGCCGAGGTGTTTCTTTAGAGGATA CGGTGGGGATCCACTTGTTGACAAGCAAAAGGAACTGGTGAAGATGTTAGAGTCGCGTGGAGTGGACGTGGTTGCGATGTTTGATGAGGATGGCTTCCAT GGTGTGGAGGTTTTTGATCCTGCAAAAGCCAAGGCTTTCTATGACTATGTTAAAGAATTTGTTTACACAACTGTTTAA
AA sequence Show only first row Show all	>Potri.001G466300.1 pacid=42791516 polypeptide=Potri.001G466300.1.p locus=Potri.001G466300 ID=Potri.001G466300.1.v4.1 annot-version=v4.1 MLASSVKLTDLCDFVENPDGSLTRNSPFPDVPPTEQITPGSKELSLSKDIPLNPNNKTFLRLFRPLNPPQNTRLPLIIYYHGGGFVLYSAATLAFHQTCS DMASHFPALVLSVDYRLAPEHRLPAAYQDAMESIKWVQNQVLDINGPSCEPWFKEYLDFSRSFLMGMSAGGNIAYHANLLALNIDIKPLKIIGLILNVPY FSAVTRTESEKRLINDPVLPLATSDRMWALSLPEDTDRDHEYCNPIVGGSLEKNKIKRLPRCFFRGYGGDPLVDKQKELVKMLESRGVDVVAMFDEDGFH GVEVFDPAKAKAFYDYVKEFVYTTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.001G466300 [exp]	0	1
AT5G18290		SIP1B, SIP1;2	SMALL AND BASIC INTRINSIC PROT...		Potri.002G227500 [exp]	9.79	0.7705
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.001G457000 [exp]	11.91	0.8143	Pt-HMGR3.1
					Potri.003G175100 [exp]	22.93	0.7931
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048800 [exp]	27.27	0.7374
AT2G35950		EDA12	embryo sac development arrest ...		Potri.006G203800 [exp]	51.70	0.7575
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.008G184900 [exp]	61.60	0.7505
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074800 [exp]	68.27	0.7209
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Potri.010G207800 [exp]	87.57	0.7295
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G084700 [exp]	115.33	0.7305
AT5G66590			CAP (Cysteine-rich secretory p...		Potri.005G130100 [exp]	118.56	0.6949

Compare expression of checked genes

Potri.001G466300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.