Plant FIBer expression Database

Potri.001G466500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12274 DUF3615 Protein of unknown function (DUF3615)
Representative CDS sequence
>Potri.001G466500.3 pacid=42791169 polypeptide=Potri.001G466500.3.p locus=Potri.001G466500 ID=Potri.001G466500.3.v4.1 annot-version=v4.1
ATGGGCGACGTCCAAGGGAAGAGAAAAGGTGATCCGGCTATTGAACGAGATCGGGGAATCCAAACTCGGGAAGATCAGCTCGGGAATGACCTGCTAAAAT
ACACAAGGAGTGCAGAACAAGGCATAGAATACCACAACAAGAAGCACGAGGGTGCTAAATTTAAGCTGGTGGAGATCATATCTGCACGTTCTTTCTTTTC
TATGGGTGTTTGGGAGCATATCAACTTCACTGCTTCTGAAGATGACAAGTCTCTGAAATTGTTTTTTGCTGAATTGTCACATGGAGAAGCTCATTGGGGA
ACGAATCATAATACAGAAGCCGAAAAAATCACTGCATGTTGTTTGTTGGAAGAAGGGTCTACCAAAGATTACTGTGGATTTTGTCCCCATGAAGACAAAG
TTTATCACCCTCTTCAGGGATTTACAGCAGGGATTCGCTGGTGA
AA sequence
>Potri.001G466500.3 pacid=42791169 polypeptide=Potri.001G466500.3.p locus=Potri.001G466500 ID=Potri.001G466500.3.v4.1 annot-version=v4.1
MGDVQGKRKGDPAIERDRGIQTREDQLGNDLLKYTRSAEQGIEYHNKKHEGAKFKLVEIISARSFFSMGVWEHINFTASEDDKSLKLFFAELSHGEAHWG
TNHNTEAEKITACCLLEEGSTKDYCGFCPHEDKVYHPLQGFTAGIRW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G466500
[exp]
0 1
AT1G17280 UBC34 ubiquitin-conjugating enzyme 3... Potri.003G073100
[exp]
1.00 0.9550
AT2G44610 RAB6, AtRABH1b,... Ras-related small GTP-binding ... Potri.001G147900
[exp]
2.44 0.9534
AT4G30920 AtLAP2, LAP2 leucyl aminopeptidase 2, Cytos... Potri.006G184500
[exp]
3.16 0.9443
AT3G50590 Transducin/WD40 repeat-like su... Potri.005G136300
[exp]
3.87 0.9450
AT5G64180 unknown protein Potri.015G005600
[exp]
4.00 0.9449
AT2G39550 GGB, ATGGT-IB, ... GERANYLGERANYLTRANSFERASE-I BE... Potri.008G054500
[exp]
4.00 0.9263 Pt-ATGGT.1
AT2G34560 P-loop containing nucleoside t... Potri.004G065100
[exp]
6.92 0.9307
AT2G45140 PVA12 plant VAP homolog 12 (.1) Potri.001G152000
[exp]
7.00 0.9379
AT5G13260 unknown protein Potri.003G164100
[exp]
7.34 0.9247
AT1G62930 RPF3 RNA processing factor 3, Tetra... Potri.004G074500
[exp]
9.48 0.9317

Potri.001G466500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.