Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14980 345 / 1e-118 alpha/beta-Hydrolases superfamily protein (.1) AT5G19290 332 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 239 / 3e-77 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 198 / 3e-61 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 197 / 7e-61 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 193 / 2e-59 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G47630 190 / 1e-57 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 188 / 2e-57 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 188 / 4e-57 alpha/beta-Hydrolases superfamily protein (.1) AT1G52760 184 / 1e-55 LysoPL2 lysophospholipase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G040000 [exp] 347 / 3e-119 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 340 / 1e-116 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 241 / 6e-78 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 193 / 3e-59 AT1G52760 560 / 0.0 lysophospholipase 2 (.1) Potri.008G049000 [exp] 189 / 6e-58 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 189 / 3e-57 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 188 / 3e-57 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 182 / 1e-54 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G175000 [exp] 181 / 3e-54 AT1G52760 554 / 0.0 lysophospholipase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036530 [exp] 340 / 1e-116 AT5G19290 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041399 [exp] 311 / 1e-105 AT5G19290 464 / 7e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10011212 [exp] 225 / 9e-72 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10018466 [exp] 199 / 2e-62 AT1G11090 382 / 1e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 201 / 3e-62 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 194 / 1e-56 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10035909 [exp] 184 / 1e-55 AT1G52760 568 / 0.0 lysophospholipase 2 (.1) Lus10007877 [exp] 185 / 2e-55 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 183 / 4e-55 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025754 [exp] 182 / 4e-55 AT1G52760 564 / 0.0 lysophospholipase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.001G466700.1 pacid=42791979 polypeptide=Potri.001G466700.1.p locus=Potri.001G466700 ID=Potri.001G466700.1.v4.1 annot-version=v4.1 ATGTTGTCACACCCAATTCACCAAGCTAATGAAAAAAGTCCCTATGGAGACCTCACAAGAGAAGAATTCTACAAGAAGCACCAAATTCTTCACCAAGAAA GCTTCATGTTCAACAAGAAGAAGATGAAAATCTTCACTCAATTTTGGCGTCCTGATGATCCCACTTCTCAGCTAAAAGGGATTGTAGCCATGGTCCATGG CTACTCCTCAGAAAGCAGTTGGCTCAATGAACTAACTGCTATAGCCATAGCCAAAGCTGGATTCTTGGTTTGTGCACTTGACCTCCAAGGCCATGGCTAT TCAGATGGACTACGTGGTCACATCCCAAATATCCAATATGTTGTTAGTGATTGCATAATGTTTTTTGACTCGGTCAAGGCTAACAGCCCTAACTTGCCAG CCTTTCTATATGGTGAATCACTAGGAGGAGCAATTTCAATCCTTATATGTTTGAAGCAAGGCTATACATGGGATGGCTTGATTTTAAGTGGTGCTATGTG TGGTATTTCAGCAAAATTTAAACCTATGTGGCCATTAGAGAAGCTACTTCCTTTGGCAGCACTATTTGCGCCCACATGGAGAGTTGTGGCCTCAAAGCCA GTCTCTAGCAGATCATACAAAGAAGAATGGAAGAGAAGGTTGGTAGCCAACAACCCGAATCGCCCGAAGTCAGGGAAGCCTCCGGCAGCGACTGCACTAG AGTTTTTGAGGGTTTGTGAGTACATAAGGAAGCATTGCTATGACCTCGGGGTTCCATTTCTAATGGTGCATGGGGAGGATGATTTTGCGTGCGACTTTAG GTCGGCTAGTTTTGTGTATGAATCGGCTACAAGCAAGGACAAAACATTGAAGATCTTTCCTGGTATGTGGCATATGTTGGTTGGTGAGCCTAAGGAAAAT GTGGAGCTTGTGTTCGGGACTATCTTGACCTGGTTAAGAGATCATGCTGCACAGCCAAAGCCAAAGCCAAAGCCAAAGCCAAAGCCAAAGCCAAAACCAT AA
AA sequence Show only first row Show all	>Potri.001G466700.1 pacid=42791979 polypeptide=Potri.001G466700.1.p locus=Potri.001G466700 ID=Potri.001G466700.1.v4.1 annot-version=v4.1 MLSHPIHQANEKSPYGDLTREEFYKKHQILHQESFMFNKKKMKIFTQFWRPDDPTSQLKGIVAMVHGYSSESSWLNELTAIAIAKAGFLVCALDLQGHGY SDGLRGHIPNIQYVVSDCIMFFDSVKANSPNLPAFLYGESLGGAISILICLKQGYTWDGLILSGAMCGISAKFKPMWPLEKLLPLAALFAPTWRVVASKP VSSRSYKEEWKRRLVANNPNRPKSGKPPAATALEFLRVCEYIRKHCYDLGVPFLMVHGEDDFACDFRSASFVYESATSKDKTLKIFPGMWHMLVGEPKEN VELVFGTILTWLRDHAAQPKPKPKPKPKPKPKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14980			alpha/beta-Hydrolases superfam...		Potri.001G466700 [exp]	0	1
AT4G38220		AQI	aquaporin interactor, Peptidas...		Potri.004G208100 [exp]	2.00	0.6840
AT1G14630			unknown protein		Potri.010G100700 [exp]	10.48	0.6125
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.003G167100 [exp]	14.35	0.6572
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Potri.002G108400 [exp]	17.00	0.5770
AT5G09760			Plant invertase/pectin methyle...		Potri.007G107300 [exp]	29.29	0.5400
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.001G060500 [exp]	30.28	0.6053
AT4G08310			unknown protein		Potri.002G085000 [exp]	33.94	0.5810
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Potri.003G163200 [exp]	35.09	0.5857
AT3G47670			Plant invertase/pectin methyle...		Potri.003G123500 [exp]	45.00	0.5316
AT4G39350		ATH-A, CESA2, A...	cellulose synthase A2 (.1)		Potri.002G066600 [exp]	50.37	0.5740

Compare expression of checked genes

Potri.001G466700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.