Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30540 520 / 0 Actin-like ATPase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164500 [exp] 691 / 0 AT1G30540 523 / 0.0 Actin-like ATPase superfamily protein (.1) Potri.014G143500 [exp] 522 / 0 AT1G30540 473 / 2e-168 Actin-like ATPase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023262 [exp] 535 / 0 AT1G30540 495 / 9e-177 Actin-like ATPase superfamily protein (.1) Lus10038542 [exp] 535 / 0 AT1G30540 493 / 5e-176 Actin-like ATPase superfamily protein (.1) Lus10033600 [exp] 521 / 0 AT1G30540 491 / 3e-175 Actin-like ATPase superfamily protein (.1) Lus10017642 [exp] 521 / 0 AT1G30540 489 / 2e-174 Actin-like ATPase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF01869 [poplar] [flax] BcrAD_BadFG BadF/BadG/BcrA/BcrD ATPase family
Representative CDS sequence Show only first row Show all	>Potri.001G466900.1 pacid=42789961 polypeptide=Potri.001G466900.1.p locus=Potri.001G466900 ID=Potri.001G466900.1.v4.1 annot-version=v4.1 ATGAATAATTATGGGGAGAGCAATGGAGATTTAAATGTCCATGAAAAACAAGTTGAAGGTCGTGATCATGGTGAAAATGGAGATGGGTCTGGTAATGGAG TCATTTTGGGGATTGATGGTGGCACTACTTCAACTGTTTGTGTCTGTATTCCTATCTTTCCTTCCTCCAATACCCTCCCTAAGCCTCTCCTTGTCCTTGG ACGTGCTGTTTCTGGTTGCTCCAATCATAACAGTGTTGGAGAAACTGCTGCCAGGGACACGTTAGAAGAGGTTATGGCTGAAGCCCTTTCAAAATCAGGT TCCAATTGGTCCACCGTTCATGCTGTTTGTTTAGGCGTTTCTGGTGTTAACCATCCAACTGATCAAGAAAGGATACTAAATTGGCTGAGAGAAATATTCC CTAGCCATGTGAAGTTGTATGTTCAGAATGATGCTGTTGCTGCTCTCGCAAGTGGGACCATGGGAAAGCTTCATGGCTGTGTTTTAATTGCTGGTACAGG GTGCATTTCTTATGGATTTGCTGAAGATGGCAGAGAAGCTCGAGCTTCAGGTGCAGGACCTGTCCTAGGTGATTGGGGGAGTGGCTATGGAATTGCTGCA AAGGCACTAACTGCAGTAATAAGGGCTCATGATGGTCGTGGTCCACAGACACTGCTAACAAATAAGATTTTAAAGGCACTCTGTCTTTCATCTCCAGATG AACTTATTGGGTGGACTTATGCTGATCCATCTTGGGCACGCATTGCAGCTCTCGTTCCAGAAGTGGTATCTTGTGCTGAAGCTTGCGATCAAGTTGCAAC TAAGATATTAGTTGATGCAGTCCAGGACTTGGCTCTAAGTGTGAAGGCTGTTGTTCAAAGACTTGGTTTGTGTGGTGAAGATGGAAATGGTTTTTTCCCT GTTGTGATGGTTGGTGGTGTTCTTGAAGCTAACAGGACTTGGGATATTGGGAAAGAAGTTGTGAAGTGTATTCAGGAGCAGTTTCCTGGGGCTCATCCTA TTAGACCACAGGTGGAACCAGCTGTCGGGGCAGCTCTGCTGGCCTGGAATTTCTTGATGAAAGAATCAACAGAGAACTGCCATAGCTGA
AA sequence Show only first row Show all	>Potri.001G466900.1 pacid=42789961 polypeptide=Potri.001G466900.1.p locus=Potri.001G466900 ID=Potri.001G466900.1.v4.1 annot-version=v4.1 MNNYGESNGDLNVHEKQVEGRDHGENGDGSGNGVILGIDGGTTSTVCVCIPIFPSSNTLPKPLLVLGRAVSGCSNHNSVGETAARDTLEEVMAEALSKSG SNWSTVHAVCLGVSGVNHPTDQERILNWLREIFPSHVKLYVQNDAVAALASGTMGKLHGCVLIAGTGCISYGFAEDGREARASGAGPVLGDWGSGYGIAA KALTAVIRAHDGRGPQTLLTNKILKALCLSSPDELIGWTYADPSWARIAALVPEVVSCAEACDQVATKILVDAVQDLALSVKAVVQRLGLCGEDGNGFFP VVMVGGVLEANRTWDIGKEVVKCIQEQFPGAHPIRPQVEPAVGAALLAWNFLMKESTENCHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30540			Actin-like ATPase superfamily ...		Potri.001G466900 [exp]	0	1
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Potri.013G004700 [exp]	1.41	0.7252	MSK.4
AT1G03250			unknown protein		Potri.019G046400 [exp]	4.89	0.7111
AT2G20740			Tetraspanin family protein (.1...		Potri.013G134200 [exp]	10.24	0.7110
AT2G44360			unknown protein		Potri.001G230100 [exp]	11.44	0.7522
AT4G13360			ATP-dependent caseinolytic (Cl...		Potri.006G156350 [exp]	11.61	0.7031
AT4G13360			ATP-dependent caseinolytic (Cl...		Potri.006G155700 [exp]	12.72	0.7058
AT3G48030			hypoxia-responsive family prot...		Potri.015G073300 [exp]	13.63	0.7142
AT3G30841			Cofactor-independent phosphogl...		Potri.004G106200 [exp]	28.28	0.6137
AT5G43430		ETFBETA	electron transfer flavoprotein...		Potri.008G165800 [exp]	33.63	0.6712
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Potri.011G124700 [exp]	37.24	0.5935

Compare expression of checked genes

Potri.001G466900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.