Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30570 1088 / 0 HERK2 hercules receptor kinase 2 (.1) AT3G46290 638 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G59700 636 / 0 Protein kinase superfamily protein (.1) AT5G54380 627 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT4G39110 622 / 0 Malectin/receptor-like protein kinase family protein (.1) AT3G51550 615 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 610 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT2G21480 608 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 603 / 0 Protein kinase superfamily protein (.1) AT3G04690 595 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164700 [exp] 1420 / 0 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1) Potri.011G128000 [exp] 655 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.001G405500 [exp] 642 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.016G138700 [exp] 639 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 637 / 0 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.009G026600 [exp] 635 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.006G110000 [exp] 634 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 630 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.001G234200 [exp] 624 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014185 [exp] 644 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10042844 [exp] 644 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 642 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 629 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10017478 [exp] 594 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10028805 [exp] 589 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 581 / 0 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 579 / 0 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10000562 [exp] 568 / 0 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1) Lus10021632 [exp] 567 / 0 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G467000.1 pacid=42791635 polypeptide=Potri.001G467000.1.p locus=Potri.001G467000 ID=Potri.001G467000.1.v4.1 annot-version=v4.1 ATGGTAATGGAGAAGGTCCAGGGAAGAGGGTTTTTGGGTGTTGTATTTCTGGTCATAGTATTCCTATCTGTTAGCAGTGGAGAAGCTCAGTCTAGATCTT TTCTTGTAAACTGTGGTGCAAATAGCAGTGTTAATGTAGATGGCAGGAGATGGATTGGTGATTTGGTCCCAAATGATAATTTCACTGTCAGTTCTCCTGG TGTCGCTGCCACTGATTCTACAGCAAATGGTGATTCACTCTACAGAACTGCCCGAATTTTTGACAATGGTTTGAATTATACTTTTTCTGGAGTGCAGGGA AACTACTTTGTTAGACTCCATTTTTGTCCATTCCCTATTGAGAATCATAATGTGAACGAGTCCTTGTTTAGTGTCGTGGCTAATGGTCTGAAACTGCTGG CTGATTTCAATGTTCCTGGTGAGATTTCAGACAAATATCTGCCCTTGCAGAATTCCAACAGCAATTCAAGTTCTTTGTCCTTGGTCAAAGAGTATATTCT AGCAATCAATGATGTGCTTGTGGTTGAGTTCATTCCATCCAAGGGATCATTCGGGTTCATAAATGCCATGGAGATTGTCCCTGTGATCGGTACACTTTTT GCAGACTTGGTTCGTAGAGTGGGTGGAAGTGATGCCAATGTGAGCGGAAGGGGGATTGAAACTATGTATAGGTTGAATGTCGGGGGACAAGAGATTAAAC CTGATCAGGATTCAGATCTTTGGAGGAAATGGGAAGTGGATTCCAGCTACATGATTACAGCCGATGCTGGTGTTGAAATCAAGAATAGTTCTAATGTCAC TTATGCTTCGAACAATGATTCCTCGGTGGCTCCTCTTCTTGTATATGAAACAGCAAGAATAATGTCCAATACAGAAGTCCTGGAGAAAAAGTTTAACATG TCATGGAAATTCGAAGTAGATCCTGATTTTGATTATTTAATTAGGTTACATTTTTGTGAGCTGGTATATGACAAGGCAAACCAGAGGATTTTCAAGGTCT ATATAAACAACAAGACTGCTGCAGATAACTTCGATGTTTATGCGCGATCAGGAGGGAAGAACATAGCGTATCATCAGGATTATTTTGATGCAATATCTGC CAAAATCAACACCCTTTGGATCCAATTGGGTCCTGACACCGCAGTTGGTGCTTGGGGAACCGATGCTCTCTTGAATGGGCTGGAGATTTTCAAGTTGAGC CGAAGTGGGAATCTTGCATACGGTGACAGAATTGGTCCAACTGGGAAATCAGCTAGTCATTTAAAATCTTGGATTCTCTGGTTGGGGATTGGAGCAGGTG TAGCTTCTGCTCTCATAATTGCAATTGCATGTACTTGCATCTTTTGCTTCTGTAAAAGTCAGAGAAATGAAATGAGCAATACCAAAGACAACCCTCCTGG GTGGCGGCCACTATTCATGCATGGTGCTGTTTTAAGTAGCATTGCTAATGCTAAGGGAGGGGCCCAAACTCTGAATGGATCCGTGGCAGCATTTACTAGA GTTGGCAGGCGGTTCACATTGTCAGAGATTCGTGCTGCAACAGACAATTTTGATGACAGTTTGGTGATTGGAGTTGGAGGCTTTGGTAAAGTATACAAAG GGGAGATCGAAGATGGCACCCTTGCAGCAATCAAGCGGTCAAACCCACAATCCGAGCAAGGCCTGGCTGAGTTTGAAACGGAGATTGAGATGCTCTCAAA GTTAAGGCACAGGCATCTGGTCTCGTTGATCGGGTTCTGCGATGAACAGAATGAGATGATCTTGGTTTACGAGTTTATGGCAAATGGAACTCTTAGAAGT CATCTTTTTGGGAGTGGTTTCCCTCCATTGACATGGAAGCAGCGATTAGAAGCATGCACTGGTGCTGCCAGGGGACTCCATTACCTTCATACAGGAGCAG ATCGAGGAATAATTCACAGGGATGTTAAGACAACCAACATTTTGCTTGACGAGAATTTTGTAGCAAAAATGGCAGATTTTGGGTTGTCTAAAGATGGTCC AGCTTTGGACCATACACATGTCAGTACAGCAGTGAAAGGGAGCTTTGGATATCTTGATCCTGAATACTTCCGTCGACAGCATTTGACTGAGAAATCTGAT GTTTACTCATTCGGCGTGGTGTTGTTTGAAGTTGTATGCTCTCGACCTGTTATAAATCCAAGCTTGCCAAAAGACCAGATCAACCTCGCAGAGTGGGCAA TGAAGTGGCAGCGGCAGAGGTCACTCGAGACCATCATTGACCCACGTCTCAGAGGAAATTCTTGCCCGGAGTCATTGAAGAAGTTCGGAGAGATAGCAGA AAAATGCCTTGCTGATGAGGGAAGGAATCGACCAACCATGGGGGAAGTTTTGTGGCATTTGGAATATGTCTTGCAACTCCATGAAGCTTGGATGCGCACC AATGCTACTGAAACTTCTATTACTAGCAGTCAGGCCTTGGAGGATTTGGAACTGAGAGTAGCAGAAGATGCACAGAGACGACCTTCCTCCTTGGACGAAG ACACTGTTAGACCTCGACATGAAGGGTGA
AA sequence Show only first row Show all	>Potri.001G467000.1 pacid=42791635 polypeptide=Potri.001G467000.1.p locus=Potri.001G467000 ID=Potri.001G467000.1.v4.1 annot-version=v4.1 MVMEKVQGRGFLGVVFLVIVFLSVSSGEAQSRSFLVNCGANSSVNVDGRRWIGDLVPNDNFTVSSPGVAATDSTANGDSLYRTARIFDNGLNYTFSGVQG NYFVRLHFCPFPIENHNVNESLFSVVANGLKLLADFNVPGEISDKYLPLQNSNSNSSSLSLVKEYILAINDVLVVEFIPSKGSFGFINAMEIVPVIGTLF ADLVRRVGGSDANVSGRGIETMYRLNVGGQEIKPDQDSDLWRKWEVDSSYMITADAGVEIKNSSNVTYASNNDSSVAPLLVYETARIMSNTEVLEKKFNM SWKFEVDPDFDYLIRLHFCELVYDKANQRIFKVYINNKTAADNFDVYARSGGKNIAYHQDYFDAISAKINTLWIQLGPDTAVGAWGTDALLNGLEIFKLS RSGNLAYGDRIGPTGKSASHLKSWILWLGIGAGVASALIIAIACTCIFCFCKSQRNEMSNTKDNPPGWRPLFMHGAVLSSIANAKGGAQTLNGSVAAFTR VGRRFTLSEIRAATDNFDDSLVIGVGGFGKVYKGEIEDGTLAAIKRSNPQSEQGLAEFETEIEMLSKLRHRHLVSLIGFCDEQNEMILVYEFMANGTLRS HLFGSGFPPLTWKQRLEACTGAARGLHYLHTGADRGIIHRDVKTTNILLDENFVAKMADFGLSKDGPALDHTHVSTAVKGSFGYLDPEYFRRQHLTEKSD VYSFGVVLFEVVCSRPVINPSLPKDQINLAEWAMKWQRQRSLETIIDPRLRGNSCPESLKKFGEIAEKCLADEGRNRPTMGEVLWHLEYVLQLHEAWMRT NATETSITSSQALEDLELRVAEDAQRRPSSLDEDTVRPRHEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30570		HERK2	hercules receptor kinase 2 (.1...		Potri.001G467000 [exp]	0	1
					Potri.004G011300 [exp]	3.16	0.8510
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.012G124400 [exp]	4.79	0.7755
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Potri.010G003300 [exp]	10.19	0.8021
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Potri.015G034500 [exp]	13.26	0.7763
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.010G067100 [exp]	15.19	0.8231
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.008G201600 [exp]	16.37	0.8350
AT1G22060			unknown protein		Potri.002G091700 [exp]	23.45	0.7986
AT3G03770			Leucine-rich repeat protein ki...		Potri.013G064300 [exp]	24.61	0.8135
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Potri.017G057900 [exp]	24.81	0.8156	BGAL9.1
AT1G63830			PLAC8 family protein (.1.2.3)		Potri.003G130700 [exp]	27.01	0.8146

Compare expression of checked genes

Potri.001G467000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.