Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44730 1265 / 0 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT2G47500 764 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G63640 573 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G27000 569 / 0 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G73860 552 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 539 / 1e-172 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G41310 529 / 3e-171 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G09170 514 / 7e-165 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G10310 454 / 7e-143 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G22610 350 / 3e-103 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165200 [exp] 1898 / 0 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.005G021100 [exp] 769 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 764 / 0 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.002G201000 [exp] 758 / 0 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 758 / 0 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G104000 [exp] 602 / 0 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 587 / 0 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 560 / 0 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 550 / 5e-178 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032897 [exp] 1511 / 0 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10001306 [exp] 1386 / 0 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10015212 [exp] 701 / 0 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10029865 [exp] 577 / 0 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10009851 [exp] 560 / 0 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10032264 [exp] 549 / 3e-176 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 540 / 9e-173 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10002007 [exp] 535 / 2e-171 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10018049 [exp] 506 / 9e-162 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 501 / 7e-160 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0188 [poplar] [flax] CH PF00307 [poplar] [flax] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Potri.001G467600.1 pacid=42788520 polypeptide=Potri.001G467600.1.p locus=Potri.001G467600 ID=Potri.001G467600.1.v4.1 annot-version=v4.1 ATGCCTCAAGAAACCAACAATGGCTCCATTTTTACCTCTCCTTGCAAGAACTTGAGAGGGTTAAAGGGTTTGATGTCCAGCAACGAGGCTTCTTACACCG AGGAGATTATTAATGACCGTGAATTAGCTCAAAGAAAAGCTGAAGAAGCAGCTTCAAGGAGGTACCAAGCAGCAGAATGGCTGAGGCAAATGGACAAGGG GGGATCAAGATCCCTGCCCAAAGAACCTTCAGAGGAAGAGTTTTGCCTTGCACTAAGAAATGGCCTCATTCTCTGCAATGTCCTCAATAAAGTCAATCCT GGTGCTGTTCTCAAGGTGGTGGACAATTCGATTCTCACTGTGCAGTCAACAGAAGGAGCAGCACAATCTGCAATTCAGTACTTTGAGAACATGAGGAATT TTTTGGTGGCTGTTAAAGACATGAAGCTTTTGACTTTTGAAGCATCTGACTTGGAGAAGGGAGGTTCATCGAGTAAGGTTGTAGATTGCATTCTCTGTCT GAAAGGATATTACGAGTGGAAGCAGGCTGGTGGAATTGGGGTATGGAGATATGGAGGGCTTGTTAAAATCGTATCTTTCCCGAAGGAATTGCCATCTTCT TTGGTCGGCAGTGAAAGTGCTGATGAGTCTGTTGATGAATCTGAATCATCACAATATGAACAACTATTAGAGTTTCTTCATCTTTCTAATGAGGTCGCAA TTGAAGAAACCAAAACTGCCAATGCTCTGGCCTTTCTTTTCGATCATTTTGGACTCAGACTTCTTCAAGCTTACCTTAAGGAGAGCAATGGGATTGAAGA GCTACCTTTGAATGGAATGGTAGTAGATGCTTTGCTCAGCAAGGTGGTTAAGGATTTCTCAGCATTGCTTGTTTCTCAGGGCACACAGCTTGGACTACTC CTGAAGAAAATTTTGAAGGGCGATATTGGTTCCCTATCAAAGACTGAATTCATAGAAGCCATTTCCCAATATCTTAGACAAAGAACTAGTTTGGCTTCAA GTGATTTCTCCAAGTTTTGTGTCTGTGGTGGGAAAAAAGAAACTATTCGGCATATTGTTAGTAACTCTTCTGGTCACGCAGAAGTAATCGATCTTCATCA GAAACAGCTTGAGGAGCTAAGATTTCATTACAAGGAGACGAGGCAACAAGTGAAACAAATTCAAGCAGGTTGGGAGGAAGAAGTCGGTAGGCTTGAGCAT CATATCACGGACCTTGAAGTAGCATCTTCTACTTATCACCAAGTTTTAGAGGAAAATCGGCAACTTTACAATCAAGTACAAGACCTTAAAGGAACAATTA GGGTCTATTGTAGAGTCAGGCCCTTCTTACCGGGTCAATCGAGCAGGCAATCTGCTGTCGACTATATTGGGGAAAATGGAAATATCATGATTGTTAATCC TCTTAAGAATGGGAAAGAAGCAAGAAAAGTGTTTTCCTTCAACAAAGTATTTGGATCAAATGTTACTCAAGAACAAATATATGTGGACACTCAGCCGTTG GTCCGGTCAGTTCTAGACGGCTATAATGTTTGCATCTTCGCATACGGGCAAACCGGATCAGGGAAGACATATACAATGAGTGGCCCTGATTTGACTTCTG AAGAAACATGGGGTGTGAACTATCGAGCTCTGCGCGACTTATTTCAGATTTCAAAGACAAGGGGAGATGTCATTAAGTATGAAGTTGGAGTTCAGATGAT AGAGATATATAATGAACAAGTGAGAGACCTGTTAGTCAGTGATGGCTCCAACAGAAGATTAGACATACGTAACAATTCACAGTTGAATGGACTTAATGTA CCTGATGCAAGCTGGATTCCAGTTTCAAGCACCCAAGATGTTCTTGATCTAATGAAAATTGGTCACAGAAATCGTGCCGTCGGTGCAACTGCTCTAAACG AGCGAAGCAGTCGATCTCATAGTGTTTTGACAGTTCATGTCTATGGAAAAGAGTTGGTTTCTGGATCAATTCTTAAAGGCTGCCTGCATCTAGTGGATTT AGCTGGAAGTGAAAGAGTGGATAAATCAGAAGCTGTTGGTGAAAGATTGAAAGAAGCTCAACATATTAACCGATCTCTCTCCGCATTGGGAGATGTCATC TCTGCTCTAGCACAGAAGAGTCCACATGTTCCCTATAGAAACAGCAAGCTTACACAAGTTCTGCAGGATTCTTTAGGTGGGCATGCTAAAACATTGATGT TTGTACATATAAATCCTGAACTTAATTCCACTGGGGAGACAATTAGCACACTGAAGTTTGCCGAGAGAGTAGCATCTATAGAACTTGGGGCAGCTAAATC GAACAAGGAAACCGGCGAAATCCGAGAGCTGAAAGAAGAGATATCAAATCTTAAACAAGCATTGGAGAGAAAGGAAGCAGAAATGGAGCAAATCAAAGGT GGTAGTACTAGAAGCACAACAGAATCTCAAAGAACAAGAGCAGTTTCTCCTTTCAGTGTGCCAAGATATGGTACAAATGCCAACTTCAAACCTGAGACAT CTCAAAGGTCAAATGATGACACTAAACGCTCAGAGATTAGAAGTTGTTCTTCGGGTAAGCAAAGGAGATCAAGGTTTCCTTCTTCACTCACAGACAAGGA AATATTACCAAGGATTCCATTCTTAGGCGAAGAGATGTTAGCGAGCTCCACAAAACCAAGATCACCATCCCCTCCTGTTAGAAGATCAATCTCAACAGAT AGAGGAGCCCACATTAGAAGCAGGGTCAAGGAGACTGTTGAGAATCAACCAGTTGCAAGAGTACCATTCCCAGCTAGAGTGCCTATCAACAAATCCATTG CTGCAATTCCAGTGATCCCATCAGCAGATAACAGCTCAAAGGGTCCATATAAAGGCTCACAAGAAGCGGTGAAGCAGGATAATATCTCCAACGCATTTTA CAACTTCCAAAGGGTTAGCACCAGGAAAGTATACCCAGAACATGACGAGGAGCAGTTTAGACAAGCTCTCAATATAAGACAAGGAGGCATTAGAAAAGTA AAAAATGAAAGCAAGGTTAAGGCAAAGCATCAACTTCCTGCAAAGTTCAATAAGTCTGATGTTGGGACAACAATGCTCTCTGATATAGATGCTGAGCCAC GAAAGAGCGACTTTTCAGAGCCAGAAAATGAGCATCTGCTTCCTGTGTCTCCAACAATAGGTGCTTTAAAGGTGAAGAAGATTCAGAGGAACTTCTCAAG GAACTCTCAGAATCTTGAACCAAGAGTTGTCCAAGCTGTGGAACCCTTAATACCTGGAAAACTTGAAAACAAGCTTCCAAATAATGTAACTCATACTGTG AAAGAAGGTGGAAACACATCTATGCCTGAATTCAGAAGGAGTCGATCTACTCCTCGCGGAAAGTATATGATTTTACCTTGA
AA sequence Show only first row Show all	>Potri.001G467600.1 pacid=42788520 polypeptide=Potri.001G467600.1.p locus=Potri.001G467600 ID=Potri.001G467600.1.v4.1 annot-version=v4.1 MPQETNNGSIFTSPCKNLRGLKGLMSSNEASYTEEIINDRELAQRKAEEAASRRYQAAEWLRQMDKGGSRSLPKEPSEEEFCLALRNGLILCNVLNKVNP GAVLKVVDNSILTVQSTEGAAQSAIQYFENMRNFLVAVKDMKLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKQAGGIGVWRYGGLVKIVSFPKELPSS LVGSESADESVDESESSQYEQLLEFLHLSNEVAIEETKTANALAFLFDHFGLRLLQAYLKESNGIEELPLNGMVVDALLSKVVKDFSALLVSQGTQLGLL LKKILKGDIGSLSKTEFIEAISQYLRQRTSLASSDFSKFCVCGGKKETIRHIVSNSSGHAEVIDLHQKQLEELRFHYKETRQQVKQIQAGWEEEVGRLEH HITDLEVASSTYHQVLEENRQLYNQVQDLKGTIRVYCRVRPFLPGQSSRQSAVDYIGENGNIMIVNPLKNGKEARKVFSFNKVFGSNVTQEQIYVDTQPL VRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLTSEETWGVNYRALRDLFQISKTRGDVIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNNSQLNGLNV PDASWIPVSSTQDVLDLMKIGHRNRAVGATALNERSSRSHSVLTVHVYGKELVSGSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVI SALAQKSPHVPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNSTGETISTLKFAERVASIELGAAKSNKETGEIRELKEEISNLKQALERKEAEMEQIKG GSTRSTTESQRTRAVSPFSVPRYGTNANFKPETSQRSNDDTKRSEIRSCSSGKQRRSRFPSSLTDKEILPRIPFLGEEMLASSTKPRSPSPPVRRSISTD RGAHIRSRVKETVENQPVARVPFPARVPINKSIAAIPVIPSADNSSKGPYKGSQEAVKQDNISNAFYNFQRVSTRKVYPEHDEEQFRQALNIRQGGIRKV KNESKVKAKHQLPAKFNKSDVGTTMLSDIDAEPRKSDFSEPENEHLLPVSPTIGALKVKKIQRNFSRNSQNLEPRVVQAVEPLIPGKLENKLPNNVTHTV KEGGNTSMPEFRRSRSTPRGKYMILP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Potri.001G467600 [exp]	0	1
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G012200 [exp]	1.41	0.9253	Pt-CALS1.3
AT1G69420			DHHC-type zinc finger family p...		Potri.008G091700 [exp]	4.47	0.9136
AT2G34190			Xanthine/uracil permease famil...		Potri.011G068200 [exp]	5.19	0.9059
AT3G54030			Protein kinase protein with te...		Potri.006G093900 [exp]	6.92	0.8983
AT5G10150			Domain of unknown function (DU...		Potri.005G078300 [exp]	7.74	0.8848
AT5G52840			NADH-ubiquinone oxidoreductase...		Potri.017G149100 [exp]	7.74	0.8889
AT3G09080			Transducin/WD40 repeat-like su...		Potri.006G096400 [exp]	9.59	0.9019
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.014G105101 [exp]	10.24	0.8449
AT4G20430			Subtilase family protein (.1.2...		Potri.001G440300 [exp]	10.24	0.8932
AT2G01818			PLATZ transcription factor fam...		Potri.008G137300 [exp]	10.58	0.8818

Compare expression of checked genes

Potri.001G467600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.