Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55810 809 / 0 UKL3 uridine kinase-like 3 (.1.2.3) AT4G26510 799 / 0 UKL4 uridine kinase-like 4 (.1.2) AT5G40870 708 / 0 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT3G27190 705 / 0 UKL2 uridine kinase-like 2 (.1) AT3G27440 685 / 0 UKL5 uridine kinase-like 5 (.1) AT1G26190 87 / 7e-18 Phosphoribulokinase / Uridine kinase family (.1) AT1G73980 84 / 4e-17 Phosphoribulokinase / Uridine kinase family (.1) AT3G53900 72 / 4e-14 UPP, PYRR PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) AT1G32060 70 / 7e-13 PRK phosphoribulokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165100 [exp] 905 / 0 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.017G069600 [exp] 728 / 0 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 719 / 0 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.017G071200 [exp] 690 / 0 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.006G091000 [exp] 79 / 6e-16 AT3G53900 379 / 7e-133 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Potri.008G110500 [exp] 78 / 4e-15 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.015G055400 [exp] 77 / 9e-15 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.010G134400 [exp] 77 / 1e-14 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.001G134000 [exp] 68 / 3e-12 AT1G32060 699 / 0.0 phosphoribulokinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016989 [exp] 778 / 0 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10021310 [exp] 773 / 0 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10041569 [exp] 710 / 0 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10035216 [exp] 702 / 0 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10032051 [exp] 592 / 0 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10022289 [exp] 585 / 0 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1) Lus10009040 [exp] 80 / 2e-15 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009678 [exp] 79 / 2e-15 AT1G73980 962 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030919 [exp] 79 / 3e-15 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030570 [exp] 79 / 4e-15 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00485 [poplar] [flax] PRK Phosphoribulokinase / Uridine kinase family CL0533 [poplar] [flax] PRTase-like PF14681 [poplar] [flax] UPRTase Uracil phosphoribosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G467800.1 pacid=42791921 polypeptide=Potri.001G467800.1.p locus=Potri.001G467800 ID=Potri.001G467800.1.v4.1 annot-version=v4.1 ATGGATTCTAAATCAGTCGAGGATATGATAGAGGCATCATCAGGGGTTCATTTTTCTGGGTTTCATATGGATGGTTTGGAGATGACAAATACAGAGGTGG GACAACCGACAACCTCAGCAGCTGAAGAGATGTGTAAGCAACCCTTTGTTATTGGAGTCGCTGGTGGAGCAGCATCTGGGAAGACTACAGTTTGTGATAT GATCATTCAACAGCTTCATGATCAGCGTGTGGTACTTGTTAACCAGGATTCTTTTTATCATGATCTAACTGAAGAGGAACTTACAAGAGTTCACGAGTAC AACTTTGACCATCCTGATGCATTTGACACTGAGCAACTACTATGTGCTATGGAGAAGTTGAGGCATGGGCAAGCAGTAGATATTCCAAATTATGACTTCA AGAGTTACAAAAACGTTTTTCCTGCAAGAAGGGTCAATCCATCAGATGTTATAATATTGGAAGGCATTCTTATTTTCCATGATCCTCGCATTCGAGAGCT GATGAACATGAAGATATTTGTCGATACAGATGCTGATGTACGTCTGGCAAGGAGAATAAGGCGTGATATTGTTGAGAAGGGTAGAGATATTGCTACAGTA CTTGATCAGTACTCAAAATTTGTGAAGCCTGCTTTTGATGATTTCATACTCCCAACAAAGAAGTATGCTGACATCATCATTCCTCGTGGAGGAGATAATC ATGTAGCCATTGATTTGATTGTGCAACACATTCGTACAAAGCTTGGCCAACATGATCTGTGTAAAATATACCCCAATTTATATGTCATTCAATCAACTTT TCAGATACGCGGTATGCATACTCTAATACGTGATTCTCAGACAACAAAACATGACTTTGTTTTTTATGCTGATAGGTTGATTCGTTTGGTTGTTGAACAT GGTCTGGGACATCTACCGTTTACGGAAAAGCAGGTGACCACTCCCACCGGGTCAGTTTACACTGGTGTGGACTTCTGTAAGAGGTTATGTGGTGTCTCTG TTATTAGGAGTGGTGAGAGTATGGAGAATGCTTTACGAGCATGTTGTAAAGGCATCAAGATTGGGAAGATTCTTATTCATAGGGAAGGTGACAATGGTCA GCAGCTAATATATGAAAAGTTACCACAAGACATCTCAGATAGACATGTGTTGCTATTGGATCCAATTCTAGGGACAGGCAATTCAGCTGTTCAGGCTATT TCTTTACTCATTAGCAAGGGTGTGCCGGAATCCCAGATCATATTTCTTAATCTCATATCTGCACCTCAGGGAGTGCATGTGGTTTGCAAAAGATTCCCAA GAATAAAGATTGTAACATCTGAGATTGAAATTGGTTTGAATGAAGATTTCCGTGTTATACCTGGTATGGGTGAGTTTGGAGATAGGTATTTCGGTACAGA TGACGAGTACCAACCAGTGGTGGCCCCTACACAATAG
AA sequence Show only first row Show all	>Potri.001G467800.1 pacid=42791921 polypeptide=Potri.001G467800.1.p locus=Potri.001G467800 ID=Potri.001G467800.1.v4.1 annot-version=v4.1 MDSKSVEDMIEASSGVHFSGFHMDGLEMTNTEVGQPTTSAAEEMCKQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHDLTEEELTRVHEY NFDHPDAFDTEQLLCAMEKLRHGQAVDIPNYDFKSYKNVFPARRVNPSDVIILEGILIFHDPRIRELMNMKIFVDTDADVRLARRIRRDIVEKGRDIATV LDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDSQTTKHDFVFYADRLIRLVVEH GLGHLPFTEKQVTTPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPQDISDRHVLLLDPILGTGNSAVQAI SLLISKGVPESQIIFLNLISAPQGVHVVCKRFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDEYQPVVAPTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55810		UKL3	uridine kinase-like 3 (.1.2.3)		Potri.001G467800 [exp]	0	1
AT4G27690		VPS26B	vacuolar protein sorting 26B (...		Potri.018G150900 [exp]	20.34	0.7779
AT5G57690		ATDGK4	diacylglycerol kinase 4 (.1)		Potri.006G172400 [exp]	25.15	0.7657
AT1G01730			unknown protein		Potri.014G082600 [exp]	70.09	0.6404
AT1G66170		MMD1	MALE MEIOCYTE DEATH 1, RING/FY...		Potri.017G135200 [exp]	74.45	0.6721
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056301 [exp]	82.66	0.6373
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Potri.009G021600 [exp]	121.73	0.6403
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.018G149700 [exp]	136.26	0.6359
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Potri.008G128900 [exp]	139.24	0.6270
AT5G13420			Aldolase-type TIM barrel famil...		Potri.001G068200 [exp]	139.97	0.6563
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Potri.003G123700 [exp]	150.47	0.6618

Compare expression of checked genes

Potri.001G467800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.