Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26500 393 / 3e-136 SUFE1, EMB1374, CPSUFE, ATSUFE SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) AT1G55805 132 / 2e-37 BolA-like family protein (.1) AT1G67810 83 / 4e-18 SUFE2 sulfur E2 (.1) AT5G50210 76 / 7e-15 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) AT5G09830 50 / 8e-08 BolA-like family protein (.1) AT5G17560 44 / 6e-05 BolA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165400 [exp] 597 / 0 AT4G26500 404 / 1e-140 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.012G036800 [exp] 115 / 2e-31 AT1G55805 130 / 6e-40 BolA-like family protein (.1) Potri.015G085300 [exp] 93 / 2e-20 AT5G50210 989 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.012G089500 [exp] 85 / 5e-18 AT5G50210 401 / 1e-134 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.001G309200 [exp] 45 / 5e-06 AT5G09830 132 / 4e-42 BolA-like family protein (.1) Potri.013G074100 [exp] 42 / 0.0002 AT5G17560 156 / 6e-49 BolA-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015605 [exp] 410 / 3e-142 AT4G26500 387 / 2e-133 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10032905 [exp] 403 / 1e-139 AT4G26500 380 / 4e-131 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10026101 [exp] 116 / 5e-32 AT4G26500 124 / 1e-37 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10002318 [exp] 112 / 4e-30 AT1G55805 119 / 2e-35 BolA-like family protein (.1) Lus10043314 [exp] 81 / 3e-16 AT5G50210 1020 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Lus10019464 [exp] 79 / 1e-15 AT5G50210 1016 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Lus10006468 [exp] 76 / 2e-15 AT1G67810 189 / 1e-59 sulfur E2 (.1) Lus10011408 [exp] 66 / 6e-12 AT1G67810 167 / 3e-51 sulfur E2 (.1) Lus10009527 [exp] 47 / 7e-06 AT5G17560 145 / 2e-44 BolA-like family protein (.1) Lus10020347 [exp] 47 / 7e-06 AT5G17560 158 / 2e-49 BolA-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01722 [poplar] [flax] BolA BolA-like protein CL0233 [poplar] [flax] SufE_NifU PF02657 [poplar] [flax] SufE Fe-S metabolism associated domain
Representative CDS sequence Show only first row Show all	>Potri.001G468300.1 pacid=42789885 polypeptide=Potri.001G468300.1.p locus=Potri.001G468300 ID=Potri.001G468300.1.v4.1 annot-version=v4.1 ATGTCTTCCACTTCAATCTCCACTTCTCTTCGCATATTGACCACAAAATTCCCAAGATCTCTTCACTCAACAAAAACCTTAATTTTCTCCTTAGAACCCA CGAATCTTTCCTTCTTTATTTTCTCAAAACCTATTTCTTTCCAAAAAATCCCAACAAAGATTCAACCTTTACTTGCATCACCATCAAGCTCTATGTCTTT GCAACCAATTGACGAACTCCCTCCAAAGCTTCAAGAGATCATCAAGCTTTTTCAATCGGTTCAAGAACCCAAAGCTAAGTATGAGCAGTTACTTTTTTAT GGAAAGAATTTGAAACCACTTGACAGTGAGTTTAAAACTAGGGAGAATAAAGTTGAAGGTTGTGTTTCTCAAGTTTGGGTTAGGGCTTATTTGGATTTTG AGAAGAATGTTGTCTTTGAAGCTGATTCTGATTCTGTTTTAACTAAGGGTCTTGCTGCTTTGCTTGTTCAAGGGCTTTCGGGCCGGCCGGTTGAGGAGGT TTTGAGGGTTTCTCCCGATTTTGTTGTGTCTCTTGGGTTGCAGCAGAGCTTGACACCTTCTAGGAATAATGGGTTTTTGAATATGTTGAAGTTGATGCAA AAGAAAACACTTGAATTGTATATGGAAGCTGAAAAGGGAAGTGGGGCTGTTGAAAGCTCGAAGCTTCGTGATGGTAGTGGTGAGAATGAGGGAAAAATTG AAAATTTGGGCTCCAATGGTGATGTTGGTGTTGAAAGTTCTGGTGACAATTCGGTCAAAGGCTTGAGTTTTGATGCGAAAATTGATGGTGGTGAGGGTTT GGGACCGGAGGGGAGTGAAAAGGGATCGAATTCGAAGGCTTTAGGGAGTAGGGGAATAAGGGTTAGGGAGAAATTGGAGAGGGAGCTAAGTCCTGTTGAA TTGGAAGTAGAGGATATTTCATATCAGCATGCTGGGCATGCTGGTGTGAGAGGGAGTAATGGGGAGACACATTTCAATGTGAAAGTTGTTTCTAAGGAGT TTGACGGGAAGAGCTTAGTGAAGAGGCATAGGCTGATTTATAATTTGTTGCAAGACGAGTTGCAGAGTGGATTACATGCATTGTCTATTGTAGCGAAGAC GCTGGATGAAGTTGATGGGAGCTGA
AA sequence Show only first row Show all	>Potri.001G468300.1 pacid=42789885 polypeptide=Potri.001G468300.1.p locus=Potri.001G468300 ID=Potri.001G468300.1.v4.1 annot-version=v4.1 MSSTSISTSLRILTTKFPRSLHSTKTLIFSLEPTNLSFFIFSKPISFQKIPTKIQPLLASPSSSMSLQPIDELPPKLQEIIKLFQSVQEPKAKYEQLLFY GKNLKPLDSEFKTRENKVEGCVSQVWVRAYLDFEKNVVFEADSDSVLTKGLAALLVQGLSGRPVEEVLRVSPDFVVSLGLQQSLTPSRNNGFLNMLKLMQ KKTLELYMEAEKGSGAVESSKLRDGSGENEGKIENLGSNGDVGVESSGDNSVKGLSFDAKIDGGEGLGPEGSEKGSNSKALGSRGIRVREKLERELSPVE LEVEDISYQHAGHAGVRGSNGETHFNVKVVSKEFDGKSLVKRHRLIYNLLQDELQSGLHALSIVAKTLDEVDGS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Potri.001G468300 [exp]	0	1
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.001G144500 [exp]	15.58	0.9271	NAP6.2
AT5G48910		LPA66	LOW PSII ACCUMULATION 66, Pent...		Potri.014G191200 [exp]	20.54	0.9245
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Potri.008G002200 [exp]	26.85	0.9147
AT3G46630			Protein of unknown function (D...		Potri.014G023400 [exp]	29.44	0.9194
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Potri.004G222600 [exp]	37.09	0.9146
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Potri.002G042000 [exp]	41.71	0.8676
AT1G14900		HMGA	high mobility group A (.1)		Potri.004G087500 [exp]	44.24	0.8804	HMGA902
AT5G43060			Granulin repeat cysteine prote...		Potri.007G047600 [exp]	51.62	0.9108
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.002G202700 [exp]	53.06	0.9102
AT5G61040			unknown protein		Potri.008G096100 [exp]	61.82	0.9106

Compare expression of checked genes

Potri.001G468300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.