Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26490 265 / 4e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G56050 247 / 9e-82 unknown protein AT3G26350 154 / 8e-45 unknown protein AT1G13050 138 / 6e-39 unknown protein AT3G11650 61 / 8e-11 NHL2 NDR1/HIN1-like 2 (.1) AT5G06320 60 / 1e-10 NHL3 NDR1/HIN1-like 3 (.1) AT5G22870 56 / 2e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G56070 54 / 3e-09 unknown protein AT2G35980 55 / 9e-09 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 48 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165500 [exp] 454 / 6e-164 AT4G26490 275 / 3e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.010G049000 [exp] 179 / 6e-54 AT3G26350 189 / 1e-56 unknown protein Potri.003G046000 [exp] 80 / 4e-18 AT5G45320 164 / 3e-51 unknown protein Potri.004G234500 [exp] 67 / 3e-13 AT5G45320 173 / 7e-55 unknown protein Potri.009G003800 [exp] 64 / 3e-12 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 60 / 2e-10 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019600 [exp] 57 / 7e-10 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.008G184500 [exp] 58 / 9e-10 AT1G13050 53 / 3e-08 unknown protein Potri.012G006000 [exp] 53 / 2e-08 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032906 [exp] 275 / 3e-93 AT4G26490 218 / 1e-70 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015606 [exp] 272 / 7e-92 AT4G26490 221 / 1e-71 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10011406 [exp] 165 / 3e-46 AT3G26350 209 / 5e-60 unknown protein Lus10006464 [exp] 160 / 3e-46 AT3G26350 208 / 2e-63 unknown protein Lus10037259 [exp] 81 / 2e-18 AT5G45320 182 / 2e-58 unknown protein Lus10021287 [exp] 57 / 2e-09 AT2G35980 236 / 7e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043411 [exp] 55 / 8e-09 AT2G27260 148 / 6e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034173 [exp] 55 / 1e-08 AT2G27260 149 / 2e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10000157 [exp] 52 / 5e-08 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10035675 [exp] 51 / 7e-08 AT5G45320 174 / 9e-56 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.001G468400.1 pacid=42792943 polypeptide=Potri.001G468400.1.p locus=Potri.001G468400 ID=Potri.001G468400.1.v4.1 annot-version=v4.1 ATGCTTCCACTCCCTCCTCCACCACCCTCCCCGCTGCCCGCAGAACCATCTCCACAACCAGAAAAGCAAGGCTTTCCAGTCTCTCTCAATCAGATAGTCA TATCAAAGCAAGCCAGAAATCAACAAAGTTCTTCGGCAGAGACATCAAATTCTGACAGCAAGAAATTAAGCAAGCCGCCAATATTCAAACATCCTCGACC TCGCCGTACCAACCCAGTTATATGGTGTGGTGCAATCCTCTGCCTCATATTCAGCCTTGTTCTCATCTTCTTTGGAATAGCAACTTTGATTATCTACCTT GTCATTAAACCAAGAAATCCAGTGTTCGACATACCAAACGCAAATCTAAGCAGCATATACTTCGATTCACCAGAGTATTTCAATGGGGATCTTACCTTCC TCGCAGACTTCTCCAACCCAAATCAGAAAATTGATGTGAGATTCGAGTATGTGGATATAGAGCTCTACTTTTCGGATAGACTTATAGGAACTCAAGCTCT TCAGCCTTTCACACAAAGAAGTCGGGAAACAAGATTGGAATCAGTTCAAATCATATCAAGCTTGGTCTATTTGCCCCAGAATCTTGCTTTTGAACTTCAA AAGCAGGTGCAGAGTAACAAGGTCCACTACAACATGAGAGTAACTTTTAAAGTGAGATCTAACCTGGGTCTGCTCCATTATTCATACTGGTTACATGGAA GGTGTGAGATAGAGATGACTGGCCCACCCACTGGTGTTATCGTTGCCCGAAGTTGCAAAACAAAGAGATGA
AA sequence Show only first row Show all	>Potri.001G468400.1 pacid=42792943 polypeptide=Potri.001G468400.1.p locus=Potri.001G468400 ID=Potri.001G468400.1.v4.1 annot-version=v4.1 MLPLPPPPPSPLPAEPSPQPEKQGFPVSLNQIVISKQARNQQSSSAETSNSDSKKLSKPPIFKHPRPRRTNPVIWCGAILCLIFSLVLIFFGIATLIIYL VIKPRNPVFDIPNANLSSIYFDSPEYFNGDLTFLADFSNPNQKIDVRFEYVDIELYFSDRLIGTQALQPFTQRSRETRLESVQIISSLVYLPQNLAFELQ KQVQSNKVHYNMRVTFKVRSNLGLLHYSYWLHGRCEIEMTGPPTGVIVARSCKTKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26490			Late embryogenesis abundant (L...		Potri.001G468400 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.007G139400 [exp]	2.64	0.8408
					Potri.006G183466 [exp]	3.74	0.8408
AT1G14520		MIOX1	myo-inositol oxygenase 1 (.1.2...		Potri.008G144500 [exp]	4.35	0.6187
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Potri.003G156900 [exp]	5.65	0.7590
					Potri.005G006000 [exp]	5.91	0.7574
AT1G10020			Protein of unknown function (D...		Potri.001G288900 [exp]	7.00	0.7254
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100700 [exp]	9.48	0.7436
AT3G56380		ARR17	response regulator 17 (.1)		Potri.019G133600 [exp]	9.48	0.7056
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100800 [exp]	10.95	0.7208
AT3G62930			Thioredoxin superfamily protei...		Potri.002G209000 [exp]	14.49	0.6870

Compare expression of checked genes

Potri.001G468400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.