Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55760 523 / 0 BTB/POZ domain-containing protein (.1) AT1G21780 365 / 2e-126 BTB/POZ domain-containing protein (.1.2) AT2G39760 76 / 2e-15 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT1G01640 74 / 3e-15 BTB/POZ domain-containing protein (.1.2) AT3G56230 69 / 3e-13 BTB/POZ domain-containing protein (.1) AT4G04090 68 / 3e-13 BTB/POZ domain-containing protein (.1) AT3G03740 68 / 1e-12 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT2G40450 64 / 6e-12 BTB/POZ domain-containing protein (.1) AT5G19000 65 / 2e-11 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT4G08455 64 / 2e-11 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G178400 [exp] 367 / 2e-127 AT1G21780 543 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.002G082800 [exp] 360 / 2e-124 AT1G21780 535 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.013G083800 [exp] 72 / 4e-14 AT3G56230 305 / 2e-104 BTB/POZ domain-containing protein (.1) Potri.010G029500 [exp] 69 / 6e-13 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.002G077000 [exp] 68 / 6e-13 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1) Potri.008G200700 [exp] 68 / 1e-12 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.005G183600 [exp] 64 / 1e-11 AT4G08455 342 / 2e-119 BTB/POZ domain-containing protein (.1) Potri.019G039500 [exp] 64 / 3e-11 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.004G194200 [exp] 62 / 1e-10 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008348 [exp] 579 / 0 AT1G55760 516 / 0.0 BTB/POZ domain-containing protein (.1) Lus10027101 [exp] 449 / 1e-159 AT1G55760 389 / 3e-136 BTB/POZ domain-containing protein (.1) Lus10042717 [exp] 373 / 1e-128 AT1G21780 557 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10029677 [exp] 360 / 2e-121 AT1G21780 538 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10041235 [exp] 69 / 3e-13 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 69 / 9e-13 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10042763 [exp] 66 / 4e-12 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10029732 [exp] 65 / 7e-12 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1) Lus10040267 [exp] 65 / 2e-11 AT2G39760 597 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10004701 [exp] 64 / 5e-11 AT2G39760 598 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.001G468700.2 pacid=42789404 polypeptide=Potri.001G468700.2.p locus=Potri.001G468700 ID=Potri.001G468700.2.v4.1 annot-version=v4.1 ATGACAGATTCTTCTGCTTATAGAGTTGAAACCACTTCTCGTCTTGCTCAATGGAAGATAGACAATCTTGCTTCTTGTACTTATCGGAAATCAGATCCTT TCAAGATTGGCAAGTGGAATTGGCATCTATCTGTGGAGAAGAACCGGGTATTATTTGTTAAGTTGTATCCAGAGATATCGAATCTAACGCGGGAAAATCC TCCAATTGCTTCATTTATTATTCGAGTTGTTTCTTCTGCTGGAGATCGCAAGGCTTTGACTCATCCAGAGGTAACAGATAAGCAGCTCAAGAACAACGAG GATTTCGTCTGGGCAATTGATGTTCCTTTAACAACAGGGAAATTCATTATCGACGTTGAATTCCTTGATTTGAAGGCAGCATCTCCAGGGGGTGGAGAAC CTTGCTCGATCTGGGACGAAGAAACCACAGAAAAGCGAGCAAATGCAACAGCTCTTGTGTCACTTGGTAGAATGTTAACAGAAAGCATCCACACGGATAT CAAAATTATTGTTTCTGATGGAAGCATTGGAGCCCACCGTGCTGTTCTTGCTGCAAGATCGCCTGTTTTCCACAGCATGTTTGCTCATGACCTGAAAGAA AAGGAACTGTCAACCATAAATATCTCCGACATGTCAATTGAAGCTTGTCAGGCTTTTCTCAATTACATATATGGGAACATCCAGAGTGAAGAATTTCTTG TCCACCGTTTGGCACTTCTCAGTGCAGCTGATAAGTATGATATTGCTGACCTGAAAGAGGCATGTCATGACAGTCTTCTGGAAGATATAGACACAAAGAA TGTACTTGAGAGGCTACAAAGCGCATCCTTGTATCAATTGCCGAAACTGAAGACCAGCTGCCTGCGGTATCTTGTGAAGTTCGGTAAGATATTTGATATT CGAGATGATTTCAATTCCTTCTTGCAATGTGCAGACAGGGATCTGATAGCTGAAGTCTTTCATGAAGTTCTCAATTCCTGGAAAGGATTCTGA
AA sequence Show only first row Show all	>Potri.001G468700.2 pacid=42789404 polypeptide=Potri.001G468700.2.p locus=Potri.001G468700 ID=Potri.001G468700.2.v4.1 annot-version=v4.1 MTDSSAYRVETTSRLAQWKIDNLASCTYRKSDPFKIGKWNWHLSVEKNRVLFVKLYPEISNLTRENPPIASFIIRVVSSAGDRKALTHPEVTDKQLKNNE DFVWAIDVPLTTGKFIIDVEFLDLKAASPGGGEPCSIWDEETTEKRANATALVSLGRMLTESIHTDIKIIVSDGSIGAHRAVLAARSPVFHSMFAHDLKE KELSTINISDMSIEACQAFLNYIYGNIQSEEFLVHRLALLSAADKYDIADLKEACHDSLLEDIDTKNVLERLQSASLYQLPKLKTSCLRYLVKFGKIFDI RDDFNSFLQCADRDLIAEVFHEVLNSWKGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55760			BTB/POZ domain-containing prot...		Potri.001G468700 [exp]	0	1
AT2G32800		AP4.3A	protein kinase family protein ...		Potri.017G055000 [exp]	1.73	0.8849
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.012G080000 [exp]	4.00	0.8621
AT5G41800			Transmembrane amino acid trans...		Potri.003G138100 [exp]	5.74	0.8591
AT1G15740			Leucine-rich repeat family pro...		Potri.006G061700 [exp]	5.83	0.8064
AT4G25433			peptidoglycan-binding LysM dom...		Potri.012G135100 [exp]	6.00	0.8459
AT5G42785			unknown protein		Potri.002G034300 [exp]	6.92	0.8398
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.004G203400 [exp]	7.48	0.8258
AT2G20030			RING/U-box superfamily protein...		Potri.002G153400 [exp]	7.93	0.7909
AT2G36210			SAUR-like auxin-responsive pro...		Potri.006G211000 [exp]	8.36	0.8300
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.004G059200 [exp]	8.94	0.7579

Compare expression of checked genes

Potri.001G468700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.