Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59810 730 / 0 ATSBT5.4 Subtilase family protein (.1) AT2G04160 711 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 551 / 0 ARA12 Subtilase family protein (.1) AT5G45650 536 / 2e-180 subtilase family protein (.1) AT3G14067 514 / 9e-172 Subtilase family protein (.1) AT4G34980 511 / 9e-171 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 495 / 2e-164 Subtilase family protein (.1) AT1G04110 489 / 3e-162 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 482 / 7e-160 Subtilase family protein (.1) AT5G51750 478 / 5e-158 ATSBT1.3 subtilase 1.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G469000 [exp] 1066 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.001G468800 [exp] 835 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.011G165900 [exp] 815 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G171600 [exp] 771 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.006G001600 [exp] 761 / 0 AT5G59810 970 / 0.0 Subtilase family protein (.1) Potri.011G050000 [exp] 719 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 711 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 708 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.005G067200 [exp] 701 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016064 [exp] 741 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039087 [exp] 702 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039086 [exp] 697 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 689 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039085 [exp] 685 / 0 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10023048 [exp] 675 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10038772 [exp] 667 / 0 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10006505 [exp] 642 / 0 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10014591 [exp] 616 / 0 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10002780 [exp] 567 / 0 AT5G45650 909 / 0.0 subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.001G468900.1 pacid=42789502 polypeptide=Potri.001G468900.1.p locus=Potri.001G468900 ID=Potri.001G468900.1.v4.1 annot-version=v4.1 ATGAGGCTCTCAATGTTCTCTCCTTTGTCTCTTTCTATTCTCCTCCTTTATATCTTTCAGAGTCAGAATTGTGCTGCCAAAAAGTCTTACATAGTTTACA TGGGAGAATCTTCATTTTCCCCATCATCATCATCAGGAGAGAAATCATTTTCCGAGTCATCGTTGACAACATTAGATGTTAAAGCAATGACAAAATCACA CTTTGATATGCTTGGAACATACTTGGACAGAAAAGAGAAGGTTGAGGATCAGATGCTTTACTCTTACACTAGATGTATCAATGGTTTTGCTGCAGTTCTC GACGAATCTCAGGTTGCAGCACTTAATGATAATCCAGGGGTGGTATCGATTTTTGAGAACAAAGAAAACAGAATGTACACAACACATTCATGGGATTTTC TTGGATTTGAGAAAAATGGAGTACCTTCTCTCTACTCGCTTCAGAAGAAGGCAAACTTTGGAGAAGATATAATTATTGGAAATCTTGACAGTGGTGTATG GCCGGAATCTAAGAGCTTTAACGATGAAGGGATGGGTCCTGTGCCATCAAAATGGAAGGGGACTTGTGATGATGGAGGTGGAGTAACTTGTAATAAAAAG CTTATTGGCGCAAGGTACTTTAACAAAGGTTTTGCTGCTAACAATGGCCCTGTACCGGAAGAGTGGAATACTGCTCGTGACGATGCCTCAGGCCACGGGA CCCACACCTTATCAACTGCTGGTGGTAGCTATGTTCCTGGAGTAAATGTTTATGGTGTTGGCAATGGAACTGCTAAGGGTGGAGCGCCAAAAGCTCGTGT AGCTACTTACAAGGTATGCTGGCCTTCCGCTAATGGTGGATGCACTGATGCTGATATCTTGGCTGCCTATGATGCTGCCATTTCTGATGGAGTTGATGTG ATCTCAGTGTCACTGGGCTCTGACGAGCCTATACAATTTTATGAAGATGGAATCTCCATTGGCTCCCTCCATGCCATTAAGAAAGGCATTCCAGTGATTG CTGCAGGAGGCAATAATGGACCAAGTGATGGATCCATAACAAATGGGGCTCCCTGGTTGTTCACGATTGGTGCTAGTACAATGGATCGTGAGATTTTTAC CACTGTTACTCTTGGCGACAAGAAGCTTTTCAAGGGAAAAACTCTGGCAAGTAAAAACCTGCCGGATGGAAAATTATATCCACTAATTAACGGTGCAGAA GCAGCGCTTGCCGAAGCAACACCTAGAGATGCACAACTATGCTTAGATGGAACACTTGATCCCAACAAGGTTTCTGGGAAAATCATACTGTGCCTTCGAG GACAAAGCCCGAGACTGCCGAAGGGATACGAGGCTGAGCGTGCTGGCGCTGTTGGGATGATATTAGCTAATGATATTATATCTGGGGACGAACTTTACTT GGAAGCTTATGAGCTCCCGTCTGCCCATATCACTTATGCTGATGGTGAATCTGTCATGGACTACATCAAAGCAACCAGAAATCCTACAGCATCAATTAGC CCTGCAATTACAAATTTTGGAGTAAAGCCAAGTCCAGCAATGGCCAAATTCTCATCAAGGGGACCTAGTAAAATTGAGCCAGCAGTACTTAAGCCTGATG TCACCGCACCTGGGGTCGATGTAATTGCTGCTTTCACCGAGGCTATAGGGCCATCTAGAAGACCATTTGACAAGCGCCGGACTCCTTACATGGTAATGTC TGGCACTTCAATGTCATGCCCTCATGTTTCCGGCATTGTTGGCCTTCTTAGAGCTATCCATCCAGATTGGAGTCCAGCTGCTCTTAAATCTGCAATCATG ACAACAGCAAAAACAAAATGTAACAACAAGAAGAGAATGCTTGATTATGATGGACAACTTGCAACCCCATTTATGTATGGTGCTGGACATGTGCAGCCAA ACTTGGCAGCAGATCCTGGCCTAGTTTACGACACAAACGTGAATGATTACCTAAGCTTCTTGTGTGCCCATGGCTATAACAAGACCTTGCTGAACGCATT CTCAGATGGACCTTATACATGCCCTGAGAATTTTAGTTTTGCTGATTTCAACTACCCTTCAATCACAGTTCCTGATCTTAAAGGCCCAGTAACTGTTACT CGCCGAGTGAAGAACGTAGGGGCTCCAGGAACATACACGGTTAGCATTAAGGCACCAGCCAAGGTTTCAGTAGTTGTTGAACCTTCTAGCTTGGAGTTCA AGCAAGCTGGTGAAGAGCAACTTTTCAAGCTTACTCTTAAGCCTATAATGGACGGCATGCCTAAAGACTACGAATTTGGGCATCTAACATGGTCAGATGG CTTGCACCGTGTCAAGAGTCCTCTTGTAGTGAAGCATGTGTAG
AA sequence Show only first row Show all	>Potri.001G468900.1 pacid=42789502 polypeptide=Potri.001G468900.1.p locus=Potri.001G468900 ID=Potri.001G468900.1.v4.1 annot-version=v4.1 MRLSMFSPLSLSILLLYIFQSQNCAAKKSYIVYMGESSFSPSSSSGEKSFSESSLTTLDVKAMTKSHFDMLGTYLDRKEKVEDQMLYSYTRCINGFAAVL DESQVAALNDNPGVVSIFENKENRMYTTHSWDFLGFEKNGVPSLYSLQKKANFGEDIIIGNLDSGVWPESKSFNDEGMGPVPSKWKGTCDDGGGVTCNKK LIGARYFNKGFAANNGPVPEEWNTARDDASGHGTHTLSTAGGSYVPGVNVYGVGNGTAKGGAPKARVATYKVCWPSANGGCTDADILAAYDAAISDGVDV ISVSLGSDEPIQFYEDGISIGSLHAIKKGIPVIAAGGNNGPSDGSITNGAPWLFTIGASTMDREIFTTVTLGDKKLFKGKTLASKNLPDGKLYPLINGAE AALAEATPRDAQLCLDGTLDPNKVSGKIILCLRGQSPRLPKGYEAERAGAVGMILANDIISGDELYLEAYELPSAHITYADGESVMDYIKATRNPTASIS PAITNFGVKPSPAMAKFSSRGPSKIEPAVLKPDVTAPGVDVIAAFTEAIGPSRRPFDKRRTPYMVMSGTSMSCPHVSGIVGLLRAIHPDWSPAALKSAIM TTAKTKCNNKKRMLDYDGQLATPFMYGAGHVQPNLAADPGLVYDTNVNDYLSFLCAHGYNKTLLNAFSDGPYTCPENFSFADFNYPSITVPDLKGPVTVT RRVKNVGAPGTYTVSIKAPAKVSVVVEPSSLEFKQAGEEQLFKLTLKPIMDGMPKDYEFGHLTWSDGLHRVKSPLVVKHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G468900 [exp]	0	1
					Potri.012G022650 [exp]	2.64	0.8612
AT1G30760			FAD-binding Berberine family p...		Potri.011G161500 [exp]	3.87	0.9029
AT5G53588		CPuORF50	conserved peptide upstream ope...		Potri.012G023450 [exp]	4.00	0.8160
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G023151 [exp]	6.32	0.8602
					Potri.011G127800 [exp]	6.92	0.8655
					Potri.019G062666 [exp]	7.21	0.8643
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022800 [exp]	7.74	0.8314
AT1G57680			unknown protein		Potri.012G023500 [exp]	12.12	0.8010
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G052600 [exp]	12.96	0.7797
AT3G08770		LTP6	lipid transfer protein 6 (.1.2...		Potri.011G021900 [exp]	20.14	0.7790

Compare expression of checked genes

Potri.001G468900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.