Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59810 754 / 0 ATSBT5.4 Subtilase family protein (.1) AT2G04160 736 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 569 / 0 ARA12 Subtilase family protein (.1) AT5G45650 536 / 2e-180 subtilase family protein (.1) AT3G14067 528 / 2e-177 Subtilase family protein (.1) AT4G34980 514 / 3e-172 SLP2 subtilisin-like serine protease 2 (.1) AT1G04110 511 / 9e-171 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 506 / 2e-169 Subtilase family protein (.1) AT3G14240 502 / 2e-167 Subtilase family protein (.1) AT5G51750 485 / 7e-161 ATSBT1.3 subtilase 1.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G468900 [exp] 1056 / 0 AT5G59810 730 / 0.0 Subtilase family protein (.1) Potri.011G165900 [exp] 849 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 845 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.014G171600 [exp] 798 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.006G001600 [exp] 766 / 0 AT5G59810 970 / 0.0 Subtilase family protein (.1) Potri.011G050000 [exp] 737 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 731 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 730 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.005G067200 [exp] 709 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016064 [exp] 746 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039087 [exp] 713 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039086 [exp] 711 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 701 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039085 [exp] 696 / 0 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10023048 [exp] 687 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10038772 [exp] 664 / 0 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10006505 [exp] 657 / 0 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10014591 [exp] 647 / 0 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10032096 [exp] 583 / 0 AT1G20160 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.001G469000.1 pacid=42793372 polypeptide=Potri.001G469000.1.p locus=Potri.001G469000 ID=Potri.001G469000.1.v4.1 annot-version=v4.1 ATGAGGCTCTTAAGGTTGTCTCCCTTAGCTCTATCTGTCCTTCTCCTTTATCTCTTTCAGACTTGTGCTGCCAAAAAGTCTTACATAGTTTACATGGGAG AGTCTTCGTTTTCCCCATTATCATCAACTGGAGAGAGTTCTTCAGAATTAGATGTGCAGCACATGACCAAATCACACTTTGATCTTCTTGGATCATGCTT GGAGAGCAAAGAGAATGTCCAGGATGTGATGATTTACTCTTACACTAAATGTATCAATGGTTTTGCTGCAAACCTCAATGAAGCTCAAGTAGCTGCCATG AAAGGTAATCCGGGAGTGATATCGGTTTTCGAGAACAAAGAAAGAATGTTGCACACAACACATTCATGGGAATTTATGGGATTTGAAGCAAATGGAGCAC CTACCCTCAGCTCGCTTCAGAAGAAGGCAAACTTTGGTGAAGGTGTAATCATTGCAAATCTTGATACCGGTGTATGGCCAGAATCCAAGAGCTTTAATGA TGAGGGAATGGGCCCTGTGCCATCAAGATGGAAGGGAACTTGTCAGGCTGGAGGTGGATTTAAGTGCAACAAAAAGCTTATTGGTGCAAGGTACTTCAAC AAAGGTTTTGCTTCTGCAAGTCCTACTCCAATCCCTACAGAGTGGAATACTGCCCGTGACACCGAGGGCCACGGTTCCCACACCTTATCTACAGCTGGTG GTAGCTTTGTTCCTGGAGCGAGTATTTTTGGTTATGGGAATGGAACTGCTAAAGGTGGATCGCCAAAAGCTCACGTGGCTGCTTACAAAGTATGCTGGCC TTCAGACAATGGTGGATGCTTTGATGCAGATATCTTGGCAGCTTTTGATGCTGCCATAGGTGATGGAGTTGATGTGATCTCAATGTCGTTGGGTCCACAT CAAGCTGTAGAATTTTTGCAAGATGGAATGGCCATTGGCTCCTTCAATGCCATCAAGAAAGGCATTCCCGTCGTTGCTTCAGCCGGCAATAGCGGACCAG TTGCTGGGTCCGTGGCTCATGGGGCTCCCTGGTTGTTTACGATTGGTGCTAGTACACTGGATCGTGAGTTTTCAGCCACTGTTACTCTTGGCAACAAGAA GTTTTTCAAGGGATCAAGTGTTGCAAGTAAAGGCTTACCAGCTGGGAAATTCTATCCATTGATCAATGCCGCAGAAGCAAGGCTTCCTACAGCACCAGCT GCAGATGCTCAGCTATGCCAAAATGGAACACTTGATCCCAAGAAGGTTGCAGGGAAAATTATAGTATGCCTTCGAGGAATAAACAGTAGAGTAGTAAAAG GACATGAGGCTGAGCTTGCTGGTGCCGTTGGGATGATATTGGCAAATGATGAAGAAAGTGGAAGTGAAATTTTGTCCGATCCTCATATGCTCCCTGCTGC CCACCTCACGTTCACTGATGGTCAAGCTGTAATGAACTACATCAAGTCGACCAAAAATCCTACAGCATCAATTAGTCCAGTACATACAGATTTAGGAGTC GTGCCGAATCCTGTGATGGCTGCATTCTCATCAAGGGGACCTAGTTTAATTGAGCCAGCAATACTCAAGCCTGATGTCACTGCACCTGGGGTTGATGTAA TCGCTGCTTACACTGAAGCTCTAGGGCCATCTGAACTACCTTTTGACAAGCGTCGGACACCTTACATCACCATGTCTGGCACTTCAATGTCATGCCCTCA TGTTTCCGGCATTGTTGGCCTCCTTAGAGCTATCCATCCAGATTGGAGTCCAGCTGCTCTTAAATCTGCAATCATGACAACAGCAAAAACAATATCTAAC TCCAAGAAGAGAATACTCGATGCTGATGGCCAACCTGCGACACCATTTGCATATGGTGCAGGACATGTGAATCCAAATCGTGCAGCAGATCCTGGCCTAG TTTATGACACGAACGAGATTGATTACCTTAACTTCTTATGTGCCCATGGCTATAACAGTACCTTCATAATAGAATTCTCAGGCGTGCCTTATAAATGTCC TGAGAATGCTAGCTTGGCTGAATTCAACTATCCTTCAATCACAGTACCTGATCTCAATGGCCCAGTGACTGTTACTCGCCGAGTGAAGAACGTAGGGGCT CCGGGCACATACACAGTCAAAGCTAAGGCACCACCTGAGGTTTCAGTGGTTGTTGAACCTTCAAGCTTGGAATTCAAGAAAGCCGGTGAAGAGAAGATTT TCAAGGTTACTTTTAAGCCTGTAGTGAATGGAATGCCGAAAGACTACACATTTGGGCACCTTACGTGGTCAGATAGCAACGGCCATCATGTCAAGAGTCC TCTTGTGGTGAAGCATGCGTAG
AA sequence Show only first row Show all	>Potri.001G469000.1 pacid=42793372 polypeptide=Potri.001G469000.1.p locus=Potri.001G469000 ID=Potri.001G469000.1.v4.1 annot-version=v4.1 MRLLRLSPLALSVLLLYLFQTCAAKKSYIVYMGESSFSPLSSTGESSSELDVQHMTKSHFDLLGSCLESKENVQDVMIYSYTKCINGFAANLNEAQVAAM KGNPGVISVFENKERMLHTTHSWEFMGFEANGAPTLSSLQKKANFGEGVIIANLDTGVWPESKSFNDEGMGPVPSRWKGTCQAGGGFKCNKKLIGARYFN KGFASASPTPIPTEWNTARDTEGHGSHTLSTAGGSFVPGASIFGYGNGTAKGGSPKAHVAAYKVCWPSDNGGCFDADILAAFDAAIGDGVDVISMSLGPH QAVEFLQDGMAIGSFNAIKKGIPVVASAGNSGPVAGSVAHGAPWLFTIGASTLDREFSATVTLGNKKFFKGSSVASKGLPAGKFYPLINAAEARLPTAPA ADAQLCQNGTLDPKKVAGKIIVCLRGINSRVVKGHEAELAGAVGMILANDEESGSEILSDPHMLPAAHLTFTDGQAVMNYIKSTKNPTASISPVHTDLGV VPNPVMAAFSSRGPSLIEPAILKPDVTAPGVDVIAAYTEALGPSELPFDKRRTPYITMSGTSMSCPHVSGIVGLLRAIHPDWSPAALKSAIMTTAKTISN SKKRILDADGQPATPFAYGAGHVNPNRAADPGLVYDTNEIDYLNFLCAHGYNSTFIIEFSGVPYKCPENASLAEFNYPSITVPDLNGPVTVTRRVKNVGA PGTYTVKAKAPPEVSVVVEPSSLEFKKAGEEKIFKVTFKPVVNGMPKDYTFGHLTWSDSNGHHVKSPLVVKHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G469000 [exp]	0	1
AT4G31980			unknown protein		Potri.003G206201 [exp]	3.31	0.9747
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G112100 [exp]	3.46	0.9707
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Potri.001G058900 [exp]	3.87	0.9712
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Potri.007G130700 [exp]	7.00	0.9551
					Potri.013G062100 [exp]	7.93	0.9505
AT2G21210			SAUR-like auxin-responsive pro...		Potri.009G127500 [exp]	8.12	0.9458
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.007G066700 [exp]	9.38	0.9549
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.016G056700 [exp]	9.79	0.9516
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034200 [exp]	10.81	0.9529
					Potri.001G320601 [exp]	11.48	0.9563

Compare expression of checked genes

Potri.001G469000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.