Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13230 366 / 1e-130 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G166000 [exp] 437 / 3e-158 AT3G13230 368 / 2e-131 RNA-binding KH domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008345 [exp] 382 / 8e-137 AT3G13230 373 / 3e-133 RNA-binding KH domain-containing protein (.1) Lus10027099 [exp] 387 / 2e-136 AT3G13230 373 / 6e-131 RNA-binding KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.001G469200.1 pacid=42791890 polypeptide=Potri.001G469200.1.p locus=Potri.001G469200 ID=Potri.001G469200.1.v4.1 annot-version=v4.1 ATGCAGTCCAGCAAAGCCCCTGCACCAATGGAAGTTGAAATAGCTCCACGTGAACAGAAGTCTGAGGGCACTTTGCCTGCAAAGCCAAAGTTTGAGCCTT TGAAAGCTCATGAAATGTCTGATGGTCGAGTTCAGTTTAGAAAAGTCTCAGTCCCGTCGCATCGGTATTCGCCCCTTAAAAAAGCATGGATGGAAATATA CACTCCTGTATATGAGCAAATGAAGATTGATATCCGTATGAACCTCAAAGCCAGAAAGGTTGAATTGAAAACTAGATCAGACACACCTGACGTAAGTAAC CTACAAAAGTGTGCAGATTTTGTGCATGCTTTCATGTTAGGTTTTGATGTGATAGATGCCATTGCTCTTTTGCGTTTGGATGAGCTCTATGTTGAATCTT TTGAAATTAAGGATGTTAAAACACTACGAGGTGAGCATTTGTCTCGGGCCATTGGGAGATTGTCTGGTAAGGGTGGCAAAACAAAGTTTGCCATTGAAAA TGCTACCAAGACAAGGATTGTGATTGCCGACACCAAGATTCACATATTAGGATCTTTTCAAAATATCAAAGTTGCGAGGGATTCTCTTTGCAGCCTCATT TTAGGGTCCCCTGCTGGAAAGGTATACTCAAAACTTAGACAAGTTACGGCTAGATTGGCAGAGAGATTTTAA
AA sequence Show only first row Show all	>Potri.001G469200.1 pacid=42791890 polypeptide=Potri.001G469200.1.p locus=Potri.001G469200 ID=Potri.001G469200.1.v4.1 annot-version=v4.1 MQSSKAPAPMEVEIAPREQKSEGTLPAKPKFEPLKAHEMSDGRVQFRKVSVPSHRYSPLKKAWMEIYTPVYEQMKIDIRMNLKARKVELKTRSDTPDVSN LQKCADFVHAFMLGFDVIDAIALLRLDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADTKIHILGSFQNIKVARDSLCSLI LGSPAGKVYSKLRQVTARLAERF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13230			RNA-binding KH domain-containi...		Potri.001G469200 [exp]	0	1
AT5G02050			Mitochondrial glycoprotein fam...		Potri.006G090700 [exp]	1.41	0.8604	Pt-SDH4.3
AT1G07210			Ribosomal protein S18 (.1)		Potri.006G170500 [exp]	1.41	0.8389
AT5G24840			tRNA (guanine-N-7) methyltrans...		Potri.018G003900 [exp]	2.23	0.8220
AT3G10530			Transducin/WD40 repeat-like su...		Potri.010G232500 [exp]	3.46	0.8285
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.003G182100 [exp]	4.58	0.8312
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Potri.001G255600 [exp]	5.83	0.7367
AT3G02650			Tetratricopeptide repeat (TPR)...		Potri.001G361500 [exp]	8.94	0.7984
AT5G14050			Transducin/WD40 repeat-like su...		Potri.005G218600 [exp]	8.94	0.7924
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Potri.004G113600 [exp]	13.00	0.7872
AT3G18760			Translation elongation factor...		Potri.018G113200 [exp]	14.96	0.8013

Compare expression of checked genes

Potri.001G469200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.