Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13235 613 / 0 DDI1 DNA-damage inducible 1, ubiquitin family protein (.1.2.3) AT3G52590 46 / 5e-06 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT2G36170 46 / 5e-06 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G62250 45 / 2e-05 UBQ5 ubiquitin 5 (.1) AT2G47110 45 / 2e-05 UBQ6 ubiquitin 6 (.1.2) AT1G23410 45 / 2e-05 Ribosomal protein S27a / Ubiquitin family protein (.1) AT4G05050 43 / 7e-05 UBQ11 ubiquitin 11 (.1.2.3.4) AT3G09790 45 / 0.0001 UBQ8 ubiquitin 8 (.1) AT2G35635 42 / 0.0001 UBQ7, RUB2 RELATED TO UBIQUITIN 2, ubiquitin 7 (.1) AT1G31340 42 / 0.0001 NEDD8, ATRUB1, RUB1 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G166100 [exp] 707 / 0 AT3G13235 599 / 0.0 DNA-damage inducible 1, ubiquitin family protein (.1.2.3) Potri.016G077200 [exp] 46 / 6e-06 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 46 / 6e-06 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.015G007100 [exp] 46 / 6e-06 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.004G194000 [exp] 46 / 6e-06 AT3G52590 210 / 3e-71 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077000 [exp] 45 / 6e-06 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.001G025300 [exp] 45 / 2e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Potri.012G114000 [exp] 45 / 2e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Potri.002G190000 [exp] 45 / 2e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007088 [exp] 570 / 0 AT3G13235 587 / 0.0 DNA-damage inducible 1, ubiquitin family protein (.1.2.3) Lus10020464 [exp] 547 / 0 AT3G13235 546 / 0.0 DNA-damage inducible 1, ubiquitin family protein (.1.2.3) Lus10008873 [exp] 46 / 6e-06 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 45 / 2e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 45 / 2e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10018367 [exp] 43 / 0.0002 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6) Lus10032107 [exp] 42 / 0.0004 AT5G40630 136 / 4e-41 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain CL0129 [poplar] [flax] Peptidase_AA PF13650 [poplar] [flax] Asp_protease_2 Aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.001G469300.1 pacid=42788625 polypeptide=Potri.001G469300.1.p locus=Potri.001G469300 ID=Potri.001G469300.1.v4.1 annot-version=v4.1 ATGAGAATCACTGTAATGACAGTAGGTGAACAGATCATATCTCTTGAAGTTGACCCTCATGAATCTGTTGAAAACGTGAAAGCTTTACTTGAAGTAGAGA CGCAGGTGCCACTCCAGCAGCAGCAGCTGCTCTATAATGGGAGGGAGATGAAGAATAATGATAAATTAAGTGCATTGGGTGTTAAGGATGAGGATTTGGT CATGATGGTCTCTAATTCTGCTGCTATTAGTGCCCCCTCCAATAATCTTGGCTTAAATCCTGATGGATCTGCTGTGAACCCTGGAGCTTTCCAGCAGCAC CTTCGAAGTGATTCTAATACAATGGCTCAACTATTTCAGGCTGATCCTGAACTTGCCCAAGCTGTTCTTGGAAACGATCTCAACAAACTGCAGGAACTTC TTAGGCAACGCCATCGCCAAAGATCTGAATTACGACGTCAACAAGAAGAGGAATTTGCCCTCCTTGAAGCAGATCCCTTTGACGTAGAGGCACAAAAGAA AATTGAAGCTGCCATTCGTCAGAAAGGAATTGACGAGAACTGGGCAGCGGCCTTGGAATACAACCCTGAAGCTTTTGCCAGGGTGATTATGTTGTATGTT GACATGGAGGTTAATGGTGTCCCTTTAAAGGCATTCGTTGATAGTGGTGCTCAGTCCACGATAATATCAAAAAGCTGTGCCGAGCGATGCGGATTGTTGA GACTTCTAGATCAACGATACAAAGGCATTGCTCATGGAGTTGGACAATCGGAGATATTGGGTCGTATTCATGTAGCTCCAATCAAGATTGGGAATATATT TTATCCTTGTTCCTTCATGGTACTGGATGCTCCTAACATGGAATTCCTCTTTGGGCTTGATATGCTCCGCAAGCACCAGTGTATTATTGATTTAAAGGAG AATGTTTTGAGAATGGGTGGTGGAGAAGTTTCTGTACCATTTCTGCAAGAAAAGGACATTCCTTCTCGTTTTCTTGATGAAGAGAGGTATTCAAAAGAAG CATCCAGCTCTGGAAACCCAGTGACATCAGGAACAACAGTGAAGAAGAATGATCCACCAGCTGGAGGTCAATCTTCTGGAGTTGCACGCGGTGGCGCGAC ACAGGGACCTGACTTTGAAGCCAAAGTTGCAAAGCTTGTTGAGCTAGGGTTTGGAAGAGAGGCAGTTATACAAGCTCTTAGATTATTTGATGGAAATGAA GAACAGGCTGCTGGATTTCTTTTTGGCGGCTGA
AA sequence Show only first row Show all	>Potri.001G469300.1 pacid=42788625 polypeptide=Potri.001G469300.1.p locus=Potri.001G469300 ID=Potri.001G469300.1.v4.1 annot-version=v4.1 MRITVMTVGEQIISLEVDPHESVENVKALLEVETQVPLQQQQLLYNGREMKNNDKLSALGVKDEDLVMMVSNSAAISAPSNNLGLNPDGSAVNPGAFQQH LRSDSNTMAQLFQADPELAQAVLGNDLNKLQELLRQRHRQRSELRRQQEEEFALLEADPFDVEAQKKIEAAIRQKGIDENWAAALEYNPEAFARVIMLYV DMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFMVLDAPNMEFLFGLDMLRKHQCIIDLKE NVLRMGGGEVSVPFLQEKDIPSRFLDEERYSKEASSSGNPVTSGTTVKKNDPPAGGQSSGVARGGATQGPDFEAKVAKLVELGFGREAVIQALRLFDGNE EQAAGFLFGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Potri.001G469300 [exp]	0	1
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.006G216600 [exp]	1.73	0.8949	RPT1.5
AT1G67250			Proteasome maturation factor U...		Potri.006G249600 [exp]	6.00	0.8613
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Potri.008G144100 [exp]	7.93	0.8535	A1.3
AT3G51260		PAD1	20S proteasome alpha subunit ...		Potri.004G174200 [exp]	8.83	0.8365	Pt-PAD1.2
AT1G64520		RPN12A	regulatory particle non-ATPase...		Potri.003G142700 [exp]	16.09	0.8267
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Potri.003G086700 [exp]	20.68	0.8454
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Potri.015G122400 [exp]	33.31	0.8431
AT3G08640			Protein of unknown function (D...		Potri.016G140700 [exp]	38.57	0.7928
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Potri.014G069800 [exp]	41.10	0.8182	PBF1.2
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.001G276700 [exp]	41.66	0.8229

Compare expression of checked genes

Potri.001G469300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.