Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VCS.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13300 1238 / 0 VCS VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G13290 1196 / 0 VCR varicose-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G166400 [exp] 1930 / 0 AT3G13300 1203 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G001400 [exp] 1252 / 0 AT3G13290 1170 / 0.0 varicose-related (.1) Potri.016G002100 [exp] 686 / 0 AT3G13300 714 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039116 [exp] 1160 / 0 AT3G13290 1233 / 0.0 varicose-related (.1) Lus10038742 [exp] 685 / 0 AT3G13300 733 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038767 [exp] 511 / 7e-168 AT3G13300 528 / 3e-175 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039096 [exp] 135 / 5e-34 AT3G13290 131 / 2e-33 varicose-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G469500.1 pacid=42793179 polypeptide=Potri.001G469500.1.p locus=Potri.001G469500 ID=Potri.001G469500.1.v4.1 annot-version=v4.1 ATGGCATCCCCAAATCCCCAACATCAACATCAACAACCGCAACCACAACCACAACCTCCTCCTTTTGACATGCACAAGTTCTTCATGCCCACATCCACAC CACCACCACCTCAAAACCCTTCTTCCTCCCCTTCTCCTCCTCCTCCCAATCTCATCATGATTCCTCCACCCCAACAAATCCCTTCTTCTTACCCTCCATC CACTGGGACCCACCACTTCCCTCACTACCCCAACTTCCCGTTTCCCTTCCCACCCCAACAACAACAATTTCAACCTCCTTACCCTCTCCAACAAAACCCT AACCCTAGCAACCCACCTCCTCTTGCTAACCCCCAACGTTCCCTCTCTTATCCCACACCCCCTCTCACCCCAAACCAACAACTCCAAGACCGTTCTGGTG CCGAAATCATGGCACTCCTCCGCACCCCTCAAAATCAAGAACCCCCACCAATCCCACCGCCGGCCGCGCCTGCGCAAGATTTTTCTGGAGCTGTTAATAA TAGTAATAATATTTTTTCGGGGCCTATTAGGATGCCTAGCAGTACTAGTAGCAAGATGCCCAAGGGAAGGAGGGTAGCGGGTGAAAATGTAGTGTATGAT GTGGATGTTAGATTGCAAGGAGAGGCGCAACCCCAGCTTGAAGTTACGCCTATAACTAAGTACTTTTCTGATCCTCAGCTGTGTTTAGGAAGGCAAATTG CTGTTAATAGGACTTATATTTGTTATGGGTTGAAGCAAGGGAATATTAGGATTCTTAATATTAATACCGCGCTGAGGTCTTTGTTTCGGACACATTCTCA GAGGGTCACTGACATGGCTTTTTTTGCCGAGGATGTTCATCTTTTGGCTAGTGCTGGCATAGATGGACGGATTAATGTCTGGAAGATCTCTGAAGGTCCG GATGTGGAAGATAAGCCACAGATTACAGCACAGACAATTATTGCTGTCCAAATAGTTGGTGAGGGGGAAATTAAAAACCCAAGGGTTTGTTGGCATTGCT ATAAACAGGAAATTTTGGTTGTTGGAGTTGGTAAACGAGTTCTGAGAATTGACACTAATAAAGTTGGAAAGGGCGAAGTCTATTCATCTGAGGCACCTCT TCAATGTACTGTTGACAAGCTGATTGATGGGGTCCAATTCGTTGGTAAACATGATGGAGAAGTCACTGATTTGTCAATGTGCCAATGGATGACCACCCGT TTGGTATCTGCTTCTATGGATGGCACGATAAAGATTTGGGAGGATCACAAGGCATCGCCCCTTGTGGTTTTGAGACCGCACGATAGCCAACCTGTTTATT CAGCCACGTTCATGACTGCTACTGACCGGCCAGATCACATCATACTTGTCACAGCAGGGCCTCAGAACAGGGAAATGAAGATTTGGGCCTCAGCTAGTGA AGAAGGCTGGCTCCTGCCTAATGATTCTGATTTGTTGAATTGCACCCAGACATTAGAGCTGAAGAGTTCAGCTGAACCTCGAGCTGAGGAGGCATTCTTC AATCAAGTAGTAGCGTTGTCTCAAATGGGCCTTATTTTACTTGCAAATGCAAAGAGGAGTGCTATATATGCTGTGCATTTAGATTACGGTCCTAATCCAG CATCAACTAGTATGGACTACATATCAGAGTTTACTGTCACTATGCCTATTTTGAGTTTAACTGGGACAAGTGACGTTGTGCATGGCCAATCTGTTGCTCA AGTTTATTGCGTACAGACACAGGCAATTCAACAGTATACTTTGGAATTATGTCAGTGCCTGCCACCTTTGATGGAAAATGTGGGTTCAGAGAGGTCAGAT TCCAGTGTTTTACATGGTGTGCCTAATGCTGATGGATATGCTGCCCTGGAGTCACATGGACGTAAATATTCTGATGTTCTTATGAGCTCCACATCAGTTG ATGTGACCACTCCGCAACAAGATACTCCTGCTTCAAATATGGACCCCAGAACTATTGCTTCAAATATGTCCTCATCAACTAGTGATGCTGATATAGTTTG TGTTCCATCACCTCCTCTTCCTTTGAGACCTAGATTATCTAGAGGTCTTGCTGAGTTTGCAGTTGGGGGAATGTTTGAGCCAAGTCCTGCATCCAGCAAC CAAGGTTTTAATCAACCAGCTATCGATTATTCAGTTGACCAGCAAATGGACACAATTTGTTCAAATTTGTCCGATGTGCCTTCCTTGGATGGTGACTCGA GGAATGAGAAAATTGTACAAGATAATTCTACCACTCTTAATCCTCCTGTTACATTTAAACACCCAACTCATCTAATAACCCCTTCTGAGATTTTAATGGG TGCTTCATCCTCTGAAATTACCAATGTTAATGAGGGCAAGAGCGAGGTTGACTCAAATGTTCAAGATGTGGTTGTAAATAATGATGTTGTCAATGCTGAG GTGGAAGTTAAAACAGTTGGTGAAACAATAGCCACTCGAGATGACGGATTTAGTCTTCGAGGGGAATCCAAAAGGCCTGTTTTTGAAAACAAGGAAAAAA TCTTTTGCTCCCAGGCATCAGATCTTGGTGTTGAGATGACTAGAGAGTGTTGTGCATTACAGCCAGACAAAAATATTGAGGAAAGTGGACAAGTTGATGG TGTTGGCATTAGCGAGTCTCTTGCCCCACCTTCTCATGCAGGTGGGGATGAAGTCCACGACTCAACAAAAGATATATCTGGGAAAGTTTCTGAGTCCACT GTGTCGACAGTTGTTCCACTGTCAACAACTCCAAGTACAAAAGGGAAGAAGCAGAAGGGGAAAAATTCTCAAGCATCAGGTTCATCTTCTCAATCTCCAC CTGCCTTTAATTCAACAGATTCTTTGAACGAACCTGTCGGGGCTTCAAATCTCCTCTCCGTGGAGGGTGCCTTTCCTCGGTTTTTGGCTATGCAGGAGGC AATTAATCAGCTAGTGATCACACAAAAGGAAATGAATAAGCAGATGTCAAATATGGTTGCAATTCCTGTTTCTAAAGAATGTAGAAGACTAGAGACCACT TTGGGGCGGAACATTGAGAAAGCCATCAAAGCCAATACTGATGCATTGTGGGCTCGATTTCAAGAAGAGAATGCAAAGAATGAGAAGTTATTGCGAGATC GCACACAGCAGATAACAAGTTTGATCTTGAATTTTATCAATAAGGACTTGGCAGCCATGTTAGAGAAAGCACTGAAGAAGGAATTGGCTTCAGTTGGACA AGGTGTAGTTCGCACAATATCTCCAGTCATCGAGAAAACAGTATCTTCTGTTATTGTCGAGTCTTTCCAGAGAGGAGTTGGTGACAAGGCAGTGAATCAA CTGGAGAAATCAGTTAACTCAAAACTTGAGGCTACTGTTGCTAGGCAAATCCAAGCTCAGTTTCAAACTTCTGGCAAGCAAGCTCTCCAGGATTCCTTGA AGGCTGGTCTGGAAGCGTCAGTAATCCCTGCCTTTGAGATGTCTTGCAAAGCTATGTTTGATCAAGTAGATGCTGCCTTTCGGAAAGGGATGGTCGAGCA TACAGCTACAACCCAGCAGCATTTTGAATCTGCACATTCTTCATTGGCACTCACTTTAAGGGATTCCATCAACTCAGCATCATCATTGACGAAAACCTTG AGTACAGAGTTGGCTGATAGTCAAAGACAGCTGTTAGCTATTGCAGCAAACTCAGGTGCAACAAATTCGTTGGCTACACAACCTAGCAATGGACCTTTGG CTAGCTTCCATGAGAAGGTTGAAACACCTTTGGATCCAACAAAAGAGCTAACACGATTAATATCTGAACAACAATACGAGGCGGCATTCACTATTGTGCT ACAAAGAAGTGATGTGGCCATGGTATCCTGGCTGTGTTGTCAGGTTGATCTGCAGGGTATCATGGCTATGTCTCCTCCTCCACTAAGCCAAAGAGTATTA CTCGCACTTCTACAGCAGCTAGCCTGTGATATAAGCAAAGAGACTCCTCGAAAGCTTGAGTGGATGACAGTGGTGGCGGCTGCCATACAGCCAACAGACC AAATGATTGCTTACTATGCACGGCCTATTGTCGAGCAAGTATGTGAGATTTTGAACCAGCTAAGGAGATCAGCTGGCGTTACTGGCGCTGACATCACAAG CATCCGTATTCTCATGCATGTCGTTAATTACTTGCTGGTGACCTGTAAATGA
AA sequence Show only first row Show all	>Potri.001G469500.1 pacid=42793179 polypeptide=Potri.001G469500.1.p locus=Potri.001G469500 ID=Potri.001G469500.1.v4.1 annot-version=v4.1 MASPNPQHQHQQPQPQPQPPPFDMHKFFMPTSTPPPPQNPSSSPSPPPPNLIMIPPPQQIPSSYPPSTGTHHFPHYPNFPFPFPPQQQQFQPPYPLQQNP NPSNPPPLANPQRSLSYPTPPLTPNQQLQDRSGAEIMALLRTPQNQEPPPIPPPAAPAQDFSGAVNNSNNIFSGPIRMPSSTSSKMPKGRRVAGENVVYD VDVRLQGEAQPQLEVTPITKYFSDPQLCLGRQIAVNRTYICYGLKQGNIRILNINTALRSLFRTHSQRVTDMAFFAEDVHLLASAGIDGRINVWKISEGP DVEDKPQITAQTIIAVQIVGEGEIKNPRVCWHCYKQEILVVGVGKRVLRIDTNKVGKGEVYSSEAPLQCTVDKLIDGVQFVGKHDGEVTDLSMCQWMTTR LVSASMDGTIKIWEDHKASPLVVLRPHDSQPVYSATFMTATDRPDHIILVTAGPQNREMKIWASASEEGWLLPNDSDLLNCTQTLELKSSAEPRAEEAFF NQVVALSQMGLILLANAKRSAIYAVHLDYGPNPASTSMDYISEFTVTMPILSLTGTSDVVHGQSVAQVYCVQTQAIQQYTLELCQCLPPLMENVGSERSD SSVLHGVPNADGYAALESHGRKYSDVLMSSTSVDVTTPQQDTPASNMDPRTIASNMSSSTSDADIVCVPSPPLPLRPRLSRGLAEFAVGGMFEPSPASSN QGFNQPAIDYSVDQQMDTICSNLSDVPSLDGDSRNEKIVQDNSTTLNPPVTFKHPTHLITPSEILMGASSSEITNVNEGKSEVDSNVQDVVVNNDVVNAE VEVKTVGETIATRDDGFSLRGESKRPVFENKEKIFCSQASDLGVEMTRECCALQPDKNIEESGQVDGVGISESLAPPSHAGGDEVHDSTKDISGKVSEST VSTVVPLSTTPSTKGKKQKGKNSQASGSSSQSPPAFNSTDSLNEPVGASNLLSVEGAFPRFLAMQEAINQLVITQKEMNKQMSNMVAIPVSKECRRLETT LGRNIEKAIKANTDALWARFQEENAKNEKLLRDRTQQITSLILNFINKDLAAMLEKALKKELASVGQGVVRTISPVIEKTVSSVIVESFQRGVGDKAVNQ LEKSVNSKLEATVARQIQAQFQTSGKQALQDSLKAGLEASVIPAFEMSCKAMFDQVDAAFRKGMVEHTATTQQHFESAHSSLALTLRDSINSASSLTKTL STELADSQRQLLAIAANSGATNSLATQPSNGPLASFHEKVETPLDPTKELTRLISEQQYEAAFTIVLQRSDVAMVSWLCCQVDLQGIMAMSPPPLSQRVL LALLQQLACDISKETPRKLEWMTVVAAAIQPTDQMIAYYARPIVEQVCEILNQLRRSAGVTGADITSIRILMHVVNYLLVTCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Potri.001G469500 [exp]	0	1	Pt-VCS.1
AT1G27750			nucleic acid binding (.1)		Potri.014G017000 [exp]	1.41	0.9271
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	1.73	0.9309	Pt-RPB1.1
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.005G180800 [exp]	2.44	0.9257	CHB904,CHB4.1
AT1G75230			DNA glycosylase superfamily pr...		Potri.005G227700 [exp]	5.29	0.8992
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.005G235400 [exp]	7.41	0.9122
AT5G08550		ILP1	increased level of polyploidy1...		Potri.008G002600 [exp]	7.93	0.8890
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	8.83	0.9014
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.002G139500 [exp]	9.16	0.8850
AT1G19480			DNA glycosylase superfamily pr...		Potri.002G035300 [exp]	9.79	0.8854
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.008G003600 [exp]	11.31	0.8944

Compare expression of checked genes

Potri.001G469500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.