Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56090 431 / 6e-151 COX15 cytochrome c oxidase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G166800 [exp] 465 / 2e-164 AT5G56090 667 / 0.0 cytochrome c oxidase 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033332 [exp] 419 / 3e-146 AT5G56090 655 / 0.0 cytochrome c oxidase 15 (.1) Lus10034789 [exp] 415 / 8e-145 AT5G56090 647 / 0.0 cytochrome c oxidase 15 (.1) Lus10034065 [exp] 291 / 7e-98 AT5G56090 527 / 0.0 cytochrome c oxidase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF02628 [poplar] [flax] COX15-CtaA Cytochrome oxidase assembly protein
Representative CDS sequence Show only first row Show all	>Potri.001G469701.1 pacid=42787560 polypeptide=Potri.001G469701.1.p locus=Potri.001G469701 ID=Potri.001G469701.1.v4.1 annot-version=v4.1 ATGAGGAAAATGTCAACTGTAGCTGCTTCTGTTGGGAGTGAAAGTAAAGAGGGTCTTAGGTTGCTTGTGAAGGGAGGACCTAAAGCTCAAAAATTGGTGG GTATATGGCTATTTGGCTCTGCTGCTTGGGTTTTTAGTATGGTGATTCCTGGTGGTGCTACAAGGTTAACAAGGTCTGGTCTTTCAATGACTGATTGGAA ATTTACTGGGATGAGTGTTGATGATTTCAAGTTTATTTATTGGATAGGATATGCGCACCGCATGCGGGGAAGGGGATTGGGGATCATGTTTGCTTTGCCA TTTTCGTATTTTCTGAGAAAAGGGTATATAACAGTGAGACTTGGAGCTAAACTTTGTGGTCCTTTTGCTCTTGGTGCTGGCCAAGGTTTAATTGGTTGGT GGATGGTTAAGAGTGGTTTAGAGGAGCCAGCATCTGAATATGCTCAGCCAAGAGTAAGCCCTTATCTTTTTGCAGCCCACCTTACTTCGGCATTTGTTAT CGATAGTGGGCTTTTCTGGACTGCTCTTTCTGTTGTAATGCCTGAACCTCCTACTGAATCTTTAGCTTGGGTTCGTGGGGCGGAAAAAGTCAAGAAGCTT GCCCTTCCTGTAAGCCTTATTGTTGGGATTACTGCCATCTCAGGAGCATTTGTTGCCGGAAATGATGCTGGGCATGCATTTAACACTTTTCCAAAGACGG GTGATACATGGATTCCTGATGATATATTTGATCTGAAGCCAGTAATTCACAACTTTTTTGAAAATACATCGGCAGTGCAGACCTGTAATTTACTTGATGA TTGCATAGTGCAAAGATCCACCCATATGAGGGGAAAAGTGGGACTGCATTCTTTGTTTGAAATTCTTGTATTAAGGAAGCAATTGGAGTTCAATTAA
AA sequence Show only first row Show all	>Potri.001G469701.1 pacid=42787560 polypeptide=Potri.001G469701.1.p locus=Potri.001G469701 ID=Potri.001G469701.1.v4.1 annot-version=v4.1 MRKMSTVAASVGSESKEGLRLLVKGGPKAQKLVGIWLFGSAAWVFSMVIPGGATRLTRSGLSMTDWKFTGMSVDDFKFIYWIGYAHRMRGRGLGIMFALP FSYFLRKGYITVRLGAKLCGPFALGAGQGLIGWWMVKSGLEEPASEYAQPRVSPYLFAAHLTSAFVIDSGLFWTALSVVMPEPPTESLAWVRGAEKVKKL ALPVSLIVGITAISGAFVAGNDAGHAFNTFPKTGDTWIPDDIFDLKPVIHNFFENTSAVQTCNLLDDCIVQRSTHMRGKVGLHSLFEILVLRKQLEFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Potri.001G469701 [exp]	0	1
AT4G31880			unknown protein		Potri.001G046500 [exp]	13.11	0.7000
AT2G02370			SNARE associated Golgi protein...		Potri.003G151800 [exp]	15.49	0.6109
AT3G04530		ATPPCK2, PEPCK2...	phosphoenolpyruvate carboxylas...		Potri.019G018100 [exp]	18.73	0.6415	PPCK2.2
AT5G18470			Curculin-like (mannose-binding...		Potri.005G015300 [exp]	30.39	0.6626
					Potri.001G353250 [exp]	32.40	0.5759
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.007G137950 [exp]	55.31	0.6069
AT5G13250			RING finger protein (.1)		Potri.001G062700 [exp]	65.40	0.6059
AT4G32060			calcium-binding EF hand family...		Potri.018G118008 [exp]	66.56	0.6327
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Potri.001G361700 [exp]	83.16	0.6218
AT1G55550			P-loop containing nucleoside t...		Potri.001G000800 [exp]	84.70	0.6157

Compare expression of checked genes

Potri.001G469701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.