Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55730 630 / 0 ATCAX5 cation exchanger 5 (.1.2) AT3G13320 628 / 0 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55720 580 / 0 ATCAX6 cation exchanger 6 (.1) AT5G01490 348 / 3e-116 ATCAX4, CAX4 cation exchanger 4 (.1) AT3G51860 347 / 1e-115 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT2G38170 347 / 2e-115 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G166900 [exp] 805 / 0 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.010G249200 [exp] 573 / 0 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2) Potri.016G115500 [exp] 358 / 2e-120 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.006G099900 [exp] 353 / 4e-118 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.009G045800 [exp] 338 / 4e-112 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.001G251200 [exp] 335 / 4e-111 AT3G51860 490 / 7e-172 cation exchanger 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027136 [exp] 625 / 0 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10034853 [exp] 563 / 0 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10033396 [exp] 560 / 0 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10006068 [exp] 500 / 1e-170 AT3G13320 516 / 1e-176 cation exchanger 2 (.1) Lus10032889 [exp] 457 / 1e-159 AT3G13320 434 / 7e-151 cation exchanger 2 (.1) Lus10009431 [exp] 380 / 9e-130 AT3G13320 404 / 3e-139 cation exchanger 2 (.1) Lus10027791 [exp] 335 / 3e-111 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 332 / 6e-110 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10002490 [exp] 328 / 2e-108 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10035507 [exp] 316 / 8e-104 AT3G51860 579 / 0.0 cation exchanger 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [poplar] [flax] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Potri.001G469800.5 pacid=42789800 polypeptide=Potri.001G469800.5.p locus=Potri.001G469800 ID=Potri.001G469800.5.v4.1 annot-version=v4.1 ATGGATCAAAATTTACAAGTGGTAGGAACTCAATCTCAACTTGAAATGGGAACGGTAGCTCAAAATGGGTCACCACATGAGTTTGAGGAGCAGAGTCTTT TTAGCCTGGAATTAGGCACTCAAAAGATGCAACCTGGTCATATATCTGAGTATGGATCAGCTCCTGGTGGTTTCCAACCTGGTGTTAGTAAGATGTGGAG GAATGTTGTGTATAAGAGCATAAAGACTGTGATTTTTTCAAATAAACTAAATGTGCTCATCCCTTTTGGGCCTCTTGCAATCCTCGTCCACATTTTGACT GGGCATAATGGTTTGGTCTTCCTTTTGAGTCTACTGGGTATAATACCTTTGGCTGAGCGTTTAGGTTATGCTACAGAGCAGCTGGCTGTGTACACAGGAC CTACAATTGGGGGTCTTCTAAATGCTACTTTCGGAAATGCAACAGAACTCATCATAGCAATATATGCACTGAGACATGGAATGATACGTGTTGTTCAGCT GTCATTATTAGGCTCAATTTTATCAAACATGTTGCTGGTGCTTGGATGTGCATTCTTCTGTGGTGGGCTTGTTTTTTACAGAAAGGAACAAGTTTTTAAC AAGGCAACTGCTACTGTGAATTCAGGATTGCTGTTGATGGCGGTCATGGGGCTACTCTTTCCTGCTGTCCTGCACTACACACACACGGAGGTGCATTACG GGAAGTCAGAGCTGGCTCTTTCAAGATTCAGCAGTTGCATTATGCTTGGGGTTTATGCTGCCTATCTTTTTTTCCAATTAAAGACCCAGAAAGATCCATA CATTCCTCTCTCTGAGGAAGGGAGTCAGAACGGGGAGAATGACAATGATGACGACGAGACTCCGGAGATTTCTAAATGGGAATCAGTTTTTTGGCTTTCA ATAATGACAGCTTGGATATCTATCCTATCAGAATATTTAGTGGATGCCATAGAGGGAACATCTCATACCTGGAATATACCAATTTCATTTATAGGGGTTA TCTTGCTCCCAATTGTGGGGAATGCTGCAGAGCATGCTGGTGCTATTATGTTTGCTATGAAAGACAAGCTTGATATATCTTTGGGCGTTGCAATAGGTTC ATCAACACAAATATCTATGTTTGGAATTCCCTTTTGTGTGGTCATTGGGTGGATAATGGGGCAGCCCATGGACTTAAACTTTAAACTTTTTGAGACTGCA ACTCTTTTCATTACTGTCATCGTCGTGGCCTTCTTTCTGCAGGAAGGATCTTCTAATTATTTTAAAGGATTGATGCTCATCCTTTGCTATGTAATTGTTG CTGCAAGTTTCTTTGTTCATGAAGATCCTCCTCCTGAAGGCAAGCCATAA
AA sequence Show only first row Show all	>Potri.001G469800.5 pacid=42789800 polypeptide=Potri.001G469800.5.p locus=Potri.001G469800 ID=Potri.001G469800.5.v4.1 annot-version=v4.1 MDQNLQVVGTQSQLEMGTVAQNGSPHEFEEQSLFSLELGTQKMQPGHISEYGSAPGGFQPGVSKMWRNVVYKSIKTVIFSNKLNVLIPFGPLAILVHILT GHNGLVFLLSLLGIIPLAERLGYATEQLAVYTGPTIGGLLNATFGNATELIIAIYALRHGMIRVVQLSLLGSILSNMLLVLGCAFFCGGLVFYRKEQVFN KATATVNSGLLLMAVMGLLFPAVLHYTHTEVHYGKSELALSRFSSCIMLGVYAAYLFFQLKTQKDPYIPLSEEGSQNGENDNDDDETPEISKWESVFWLS IMTAWISILSEYLVDAIEGTSHTWNIPISFIGVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGQPMDLNFKLFETA TLFITVIVVAFFLQEGSSNYFKGLMLILCYVIVAASFFVHEDPPPEGKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.001G469800 [exp]	0	1
AT4G00355		ATI2	ATG8-interacting protein 2, un...		Potri.014G086000 [exp]	8.48	0.7749
AT1G27000			Protein of unknown function (D...		Potri.010G092700 [exp]	12.48	0.7524
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.005G217500 [exp]	14.35	0.7196
AT5G25770			alpha/beta-Hydrolases superfam...		Potri.006G240600 [exp]	27.33	0.7133
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Potri.010G107500 [exp]	32.32	0.8164
AT1G11360			Adenine nucleotide alpha hydro...		Potri.013G150200 [exp]	35.09	0.8012
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Potri.002G150700 [exp]	41.37	0.7183
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G061900 [exp]	42.89	0.7859
AT3G47960			Major facilitator superfamily ...		Potri.017G076800 [exp]	50.51	0.7966
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073491 [exp]	52.53	0.7871

Compare expression of checked genes

Potri.001G469800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.