Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13330 2595 / 0 PA200 proteasome activating protein 200 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G167700 [exp] 2110 / 0 AT3G13330 1687 / 0.0 proteasome activating protein 200 (.1) Potri.011G167650 [exp] 885 / 0 AT3G13330 722 / 0.0 proteasome activating protein 200 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008354 [exp] 2695 / 0 AT3G13330 2607 / 0.0 proteasome activating protein 200 (.1) Lus10027111 [exp] 1686 / 0 AT3G13330 1614 / 0.0 proteasome activating protein 200 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11919 [poplar] [flax] DUF3437 Domain of unknown function (DUF3437) PF16507 [poplar] [flax] BLM10_mid Proteasome-substrate-size regulator, mid region
Representative CDS sequence Show only first row Show all	>Potri.001G470600.2 pacid=42793735 polypeptide=Potri.001G470600.2.p locus=Potri.001G470600 ID=Potri.001G470600.2.v4.1 annot-version=v4.1 ATGCATCTCTACAATGCGTGGTTGCCACCACCGGTGGCAGAGGAGACGAAGAAAGAGAAAGACTCCTTCCGTCGCGTCCTGAACTCTGTTAAAGATTCTT ACAAACCTGACGATCCTGATTCCGTTTACTCCACTCTCAAATGGGTTTCCGTCCTCGAACTTTTTATCAAGGCGAAGAGCGAATTGAATTTGGAAGATGT AGCTGAGCTCGTTCAAATTGGAATTGAATTGTTCAATATTTCGCAGAATAAGCTTTATGCTCAGGTGAGATGGGGAAATTTGTTAGTGAGAGTGTTGAAT AAGTATAGAAAGAAGTTGGCTTTCAAAGTACAATGGAGGCCGTTGTATGATACTCTAATTCATACTCATTTTTCAAGGAATACTGGTCCAGAAGGGTGGA GATTGAGACAAAGGCATTTTCAGACTATTACTTCACTTGTTCGGTCCTGCCGGAGATTCTTTCCAGTTGGTTCGGCTTTGGAGATTTGGAACGAGTTTAG TTCTCTATTGGAAAATCCATGGCACAATTCAGCCTTTGAAGGATCGGGGTTTGTGAGACTGTTTCTACCTACAAACTTGGAGAACCAGGACTTCTATACT GATGCTTGGGTTAAAAAAAGTTTGGACTCGTGGGACTCAATACCAAATTCCCAATTCTGGAACAACCAGTGGGCAGCTGTCATAGCACGTGTTATTAAAA ACTACAACTTTATCAACTGGGAATGCTTCTTACCAACGCTTTTTAGTAGATACTTGAACATGTTCGAGGTTCCTGTGGCAAATGGAAGTGCTTCATATCC ATTTTCTGTTGACGTTCCAAGATATACAAGATTCTTATTCTCCAATAAAACTGCCACCCCAGCAAAGGCCATTGCAAAGTCAATTGTCTATCTGCTTAAA CCTGGTAGTGCAGCTCAGCAGCATTTCGAGAAATTGATCAACCTCTTAGAACAATATTACCATCCCTCTAATGGAGGTCGCTGGACTTATTCATTGGAGA GGTTTTTGCTTAATTTGGTAATTACGTTCCAGAAGCGCTTACAGCGTGAGCAACAGAGCACTGATAGCAGTAGACAGGCAGATATGTTTCTTGGAAGATC AGAAAGGACTTTTTTTGTCAATGTTTTGCTGAAGTTACTTGATCGCGGACAATATAGCAAAGATGAACATCTTTCTGAGACAGTTGCTGCAGCAACTTCC ATTTTGTCATATGTGGAGCCAACTCTGGTTCTTCCATTTTTGGCATCTCGATTCCATTTGGCCTTGGAGACGATGACTGCCACCCACCAGTTGAAAACTG CAGTGATGTCAGTAGCATATGCAGGACGTTCTCTATGTCTCACATCCCTCTCAAGAATAGGTAAACAGGAGGATTGTGGTGGTGGTGATGATGCATATGT TGATCTTCTAACGATCTCATTATCAAATGCTTTACTTGGTATGGATGCTAATGATCCTCCCAAAACATTGGCGACCATGCAGTTACTTGGGTCTATATTT TCTAATATTGCTACTTTGGATGATAACACCGATCAGTTATCGTTCTTGCCAATGATCCAGTTTTCTGAATGGTTGGATGAATTCTTATGTCGCTTATTTT CGTTACTTCAACATTTGGAACCTGGCAGTGTTCTGAATGAAGGCCTACATTCATCAGCAACATCAGGAACCTTTCTTGTAGATGATGGTCCTTTCTACTA TTGTATGCTTGAAATCTTGCTTGGAAGGCTATCAAAACCTCTATACAATCAGGCTTTGAGAAAAATTGCAAAGTTTGTTAGGACAAACATTCTTCCTGGA GCGGTTGCAGAGGTTGGATTGCTTTGCTGTGCATGTGTTCATTCAAACCCGGAAGAGGCTGTTGCTTCTCTCGTTGATCCAATCTTGTCATCTGTTATAT CCTCTTTGAAAGGAACACCTGCTACAGGGTTTGGAGGGAGCGGGATTCCTGATGCTAAAGTTTCAATTAAGGCAAAACCAACAATCTCTCCAGCTCTTGA AACAGCAATCGATTATCAATTGAAAATATTATCAGTTGCCATAAACTATGGAGGTCCTGCTCTTCTTCGTTACAAGAATCAATTCAAAGAGGCTATCGCG TTAGCTTTTGAATCTCCCTCTTGGAAGGTTAATGGAGCTGGTGATCATCTCCTTCGATCCCTCCTTGGAAGCCTGATTGTTTATTATCCTATCGATCAAT ACAAGTGCATTTCATGGCATCCAGCTGCTACGGCATTAGAAGAATGGATCAGTGCAAAAGATTATAATAGTGATGGACCATTGATGGGCCCCAAGTGGCA TGTTCCAAGTGATGATGAAGTTCAGTTTGCAAATGAACTTTTAAACCTTCATTTTCAATCAGCTTTAGATGACCTTTTGAAAATATGCCAAAATAAAATA CATTCAGATGCAGGGAATGAGAAAGAGCACTTGAAAGTGACTCTTTTGCGAATTGATTCTTCATTGCAAGGGGTTTTATCTTGCTTACCTGATTTCAGCC CGTCCTCCAGGAATGGGATTGTTGAAGATACAAGTCATACTTCTTTCTTGATAGCCGGAGCAACTGGTTCAAGTGTTGGCAGCACTGGACTGCGTGAAAA AGCTGCTGAGATTATACATGCAGCTTGCAAATATATGTTAGAAGAAAAATCAGATGACAGCATCCTCTTGATACTCATTGTCCGTATTATGGATGCTTTG GGAAACTTTGGAAGTTTGGAGTATGAGGAGTGGTCAAATCACAGGCAGGCTTGGAAGTTGGAATCTGCTGCTATTTTAGAACCTCCAGTGAATTTTATCG TGTCTTCTCATTCTCGAGGAAAAAAAAGGCCCAGGTGGGCTCTTATCGACAAAGCATACATGCATAGTACTTGGAGGTCATCACAATCCTCCTATCATCG GTTTCGTTCAAGTGGGAACTTCTCTCCACCAGATCATGCAATTCTTTTGATGGATGATCTGCTAAACCTTTCTTTGCATAGCTATGAAACTGTTCGTGCG CTTGCTGGAAAATCTCTGCTGAAGATGATTAAGAGATGGCCATCAATGATTTCAAACTGTGTTCTCTCACTTACTGAACACTTAAAGAATCCCAGCTCAC CAGAATATGCAGTGCTGGGTTCTTGTACAATCCTTTCTATGCAAACAGTTCTCAAGCATTTGACAACAGATCCAAAAGCATTGTCTTCTTTTCTTCTTGG TATTCTTTCAAGCTCACATCATGAATCACTGAAAGCCCAGAAAGCAATTAATGAGCTTTTTGTTATGTACAACATCCAATTTTCGGGAGTGTCTAGAAGC ATTTTCAGGACATCAGATAATCACATAGATGGACCAAATTTTGCTGATTTGGTTTCTCAAATTGGATCGATGAGTTTTGATTCTACTGGTTTGCATTGGC GGTATAACCTGATGGCTAACAGAGTTCTTCTTTTGTTGGCTATGGGTTCTAGAAATGTTCCAAACATCTCTTCTAAAATCCTGAGTGAAACTGCTGGTCA CTTTCTTAAGAATTTAAAAAGTCAACTTCCTCAAACAAGGATACTAGCAATCTCAGCTCTAAATACACTATTAAAAGAATCGCCTTACAAACTCTCTGCT GAGAATCAGTCTGCAGTATCTGAGGAGTTACAAACACATGTCAAATCATCTCTAGAAGGGGCATTAAGTGAAATTTTTCAGGAAGAAGGGTTCTTTAACG AGACTTTGAATAGCCTGTCTCATGTTCATATAATCACTGATACTGAGAGCACATCTTCCCGAGGAAGTCACAGGAATTCTTCTATCCAAAGCCTTGCAGA CAAATCAATTACCCGTTTCTATTTTGATTTTTCGTCTTCATGGCCACGTACTCCTAGTTGGATCTCTCTATTAGGAAGTGATACATTTTACTCCAGCTTT GCACGAATCTTTAAACGGCTAATACAAGAATGTGGCATGCCTGTCTTACTAGCACTTAAAGAAACATTGGAGGAGTTTGCAAATGCTAAGGAAAGGTCTA AGCAGTGTGTTGCTGCTGAAGCGTTAGCTGGGGTGTTGCACTCTGATGTCAATGGTCTTTTAGGAGCATGGGACAGCTGGATAACAGTTCAGTTGCAGAG TATCATTCTTTCTCAGTCAGTGGAATCTATTCCAGAGTGGGCAGCTTGCATACGCTATTCAGTGACAGGAAAAGGAAAATATGGTACAAGAGTCCCCATC CTGAGGAAACAAATTTTGGACTGTTTGATGAAACCTTTACCTCCAGCTCTAAATACCACTGTTGTTGCAAAGCGCTACACTTTTCTTGCAGCTGCACTCA TAGAAATATCCCCACAAAAGATGCCAATGGCTGAGATAGAGCTCCATAACAAACTTATGAATGAGTTGTTGGATAACATGTGCCACTCATCAGCCCAAGT AAGGGAAGCTATAGGTGTTACCCTGTCCGTGTTGTGCTCTAACATTCGTCTTCAGCTGTCATCTGCTCATGATTATTCACGTGAAGGAGGCAGTGAGATT GACAATCAATTGAAAGAGGAAAAGTGGGTTTTTGTTCTGACTGACCGAGCATCTGATGTGGTCACAAATATTCAGAATACTAGCCCAGCAGATAACTTGG AGACTGATGGGCATATAGCTCTGCAAAACAGGTCTTTGAATGGGGATGCACTGGATGATGTTAAGTGGATGGAAACGCTATTTCATTTTATCATCTCAAC GTTGAAGTCTGGGAGATCTTCTTATGTACTGGATGTTATCGTGCAATTTCTCTATCCTGTACTTTCTTTGCAGGAAACATCAAATAAAGATTTGTCAACA CTGGCAAAGGCATGTTTTGAATTGATGAAATGGAGAATTTTCTTGGCACCTCATCTCCAGAGGGCTGTTTCAGTGATTCTTTCTTCTGCCAATGATTCTA ACTGGCGGACCCGATCAGCTACTCTGACATATTTGCGTACTTTTATGTATAGGCATACTTTCATCCTCTCAAATGTGGAAAAACAACAAATTTGGAGCAC AGTTGAAAGTCTCCTGAGAGATAATCAAGTAGAGGTAAGGGAGCATGCTGCAGCAGTTCTAGCAGGTTTGGTGAAGGGTGGGAATGAAGATCTTGCAAGA GACTTCCGTGAAAGAGCTTACTTGGAGGCAAAAACGATCATCCAAATGAAGAGAAAGCAGAGGAATCTAAAAAATCACCAATCTGTAGCATCTATTCATG GTGCAGTACTTGCTTTGGTGGCTTCTGTATTGTCAGTTCCATATGATATGCCCAGTTGGTTGCCTGAGCATGTTACTTTGCTGGCTCGTTTTGGAGGAGA GCCATCACCTGTGAAATCTGCAGTTACAAAAGCAATCGCTGAGTTCCGACGGACTCATGCGGATACATGGAATGTCCAGAAAGATTCATTTACTGAAGAG CAACTTGAGGTTCTGGCTGATACATCGTCGTCGTCATCATATTTTGCTTGA
AA sequence Show only first row Show all	>Potri.001G470600.2 pacid=42793735 polypeptide=Potri.001G470600.2.p locus=Potri.001G470600 ID=Potri.001G470600.2.v4.1 annot-version=v4.1 MHLYNAWLPPPVAEETKKEKDSFRRVLNSVKDSYKPDDPDSVYSTLKWVSVLELFIKAKSELNLEDVAELVQIGIELFNISQNKLYAQVRWGNLLVRVLN KYRKKLAFKVQWRPLYDTLIHTHFSRNTGPEGWRLRQRHFQTITSLVRSCRRFFPVGSALEIWNEFSSLLENPWHNSAFEGSGFVRLFLPTNLENQDFYT DAWVKKSLDSWDSIPNSQFWNNQWAAVIARVIKNYNFINWECFLPTLFSRYLNMFEVPVANGSASYPFSVDVPRYTRFLFSNKTATPAKAIAKSIVYLLK PGSAAQQHFEKLINLLEQYYHPSNGGRWTYSLERFLLNLVITFQKRLQREQQSTDSSRQADMFLGRSERTFFVNVLLKLLDRGQYSKDEHLSETVAAATS ILSYVEPTLVLPFLASRFHLALETMTATHQLKTAVMSVAYAGRSLCLTSLSRIGKQEDCGGGDDAYVDLLTISLSNALLGMDANDPPKTLATMQLLGSIF SNIATLDDNTDQLSFLPMIQFSEWLDEFLCRLFSLLQHLEPGSVLNEGLHSSATSGTFLVDDGPFYYCMLEILLGRLSKPLYNQALRKIAKFVRTNILPG AVAEVGLLCCACVHSNPEEAVASLVDPILSSVISSLKGTPATGFGGSGIPDAKVSIKAKPTISPALETAIDYQLKILSVAINYGGPALLRYKNQFKEAIA LAFESPSWKVNGAGDHLLRSLLGSLIVYYPIDQYKCISWHPAATALEEWISAKDYNSDGPLMGPKWHVPSDDEVQFANELLNLHFQSALDDLLKICQNKI HSDAGNEKEHLKVTLLRIDSSLQGVLSCLPDFSPSSRNGIVEDTSHTSFLIAGATGSSVGSTGLREKAAEIIHAACKYMLEEKSDDSILLILIVRIMDAL GNFGSLEYEEWSNHRQAWKLESAAILEPPVNFIVSSHSRGKKRPRWALIDKAYMHSTWRSSQSSYHRFRSSGNFSPPDHAILLMDDLLNLSLHSYETVRA LAGKSLLKMIKRWPSMISNCVLSLTEHLKNPSSPEYAVLGSCTILSMQTVLKHLTTDPKALSSFLLGILSSSHHESLKAQKAINELFVMYNIQFSGVSRS IFRTSDNHIDGPNFADLVSQIGSMSFDSTGLHWRYNLMANRVLLLLAMGSRNVPNISSKILSETAGHFLKNLKSQLPQTRILAISALNTLLKESPYKLSA ENQSAVSEELQTHVKSSLEGALSEIFQEEGFFNETLNSLSHVHIITDTESTSSRGSHRNSSIQSLADKSITRFYFDFSSSWPRTPSWISLLGSDTFYSSF ARIFKRLIQECGMPVLLALKETLEEFANAKERSKQCVAAEALAGVLHSDVNGLLGAWDSWITVQLQSIILSQSVESIPEWAACIRYSVTGKGKYGTRVPI LRKQILDCLMKPLPPALNTTVVAKRYTFLAAALIEISPQKMPMAEIELHNKLMNELLDNMCHSSAQVREAIGVTLSVLCSNIRLQLSSAHDYSREGGSEI DNQLKEEKWVFVLTDRASDVVTNIQNTSPADNLETDGHIALQNRSLNGDALDDVKWMETLFHFIISTLKSGRSSYVLDVIVQFLYPVLSLQETSNKDLST LAKACFELMKWRIFLAPHLQRAVSVILSSANDSNWRTRSATLTYLRTFMYRHTFILSNVEKQQIWSTVESLLRDNQVEVREHAAAVLAGLVKGGNEDLAR DFRERAYLEAKTIIQMKRKQRNLKNHQSVASIHGAVLALVASVLSVPYDMPSWLPEHVTLLARFGGEPSPVKSAVTKAIAEFRRTHADTWNVQKDSFTEE QLEVLADTSSSSSYFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13330		PA200	proteasome activating protein ...		Potri.001G470600 [exp]	0	1
					Potri.019G036450 [exp]	2.23	0.8080
AT5G64500			Major facilitator superfamily ...		Potri.001G286600 [exp]	3.60	0.7077
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.003G142800 [exp]	5.65	0.7698
AT1G19025			DNA repair metallo-beta-lactam...		Potri.007G106700 [exp]	7.74	0.7087
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Potri.003G173700 [exp]	10.39	0.7321
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.005G207500 [exp]	10.53	0.7660
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.002G055100 [exp]	11.83	0.7530
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.010G023800 [exp]	13.26	0.6916	Pt-CUL1.3
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Potri.014G056800 [exp]	15.19	0.7271
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.007G084901 [exp]	15.29	0.6816

Compare expression of checked genes

Potri.001G470600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.