Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56120 293 / 2e-101 unknown protein AT3G12870 120 / 1e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G167900 [exp] 406 / 3e-146 AT5G56120 276 / 7e-95 unknown protein Potri.005G096100 [exp] 125 / 8e-36 AT3G12870 231 / 2e-77 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008355 [exp] 295 / 5e-102 AT5G56120 261 / 2e-88 unknown protein Lus10027112 [exp] 273 / 3e-93 AT5G56120 253 / 2e-85 unknown protein Lus10031198 [exp] 117 / 1e-32 AT3G12870 306 / 3e-107 unknown protein Lus10031776 [exp] 117 / 2e-32 AT3G12870 311 / 3e-109 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G470800.1 pacid=42787591 polypeptide=Potri.001G470800.1.p locus=Potri.001G470800 ID=Potri.001G470800.1.v4.1 annot-version=v4.1 ATGGCTCAAATGAAAGATGCCCACATCGTAGAAATCCCAGTAGATGAAGAGCACCAACAGAAACTGATATGTGCCATGAACACAATAAAAGCAATTCAAA ACCACCCATTAGCAGAAATTTCTAATAGTCCGGGCCATCTTTTGCTTCTCAAGCTATGGCAAAGAGAAGAGGATCTTTTTGGCCGTAGAATTGCTTTGAA AGAGTCAAGAATGGACTCTATCAAGCGCGAAATCTTTCAACTTTGTTGCTTCTTTTTAGTCTTTCATGGGTTTTTCTTAACTATTTTGTTTACCTCTTCT GTTGATAGTAAAGAGCATTCTTGCAAGAATTGGTGGATACCTTCTCTTGTGTCTGTCTGTACTTCGCTTGTATTTGTGTTCTTGGTTCAGGTCAAGGTTT GCAGGTACTGGAAGGTGTGGAGGCAATTGCAAAGAGAGAAGAATGATAATAGAGCTCTTACTAGGTGTATTCAAGAGTTGAGAATGAAAGGGGCTAGCTT TGATTTGTCAAAAGAGCCACTGAGCGGAAAGAAAATGAAGAGCTCAAGTGTTGAGATCAAATGGAAACCACTTACTTGGTGTTCACAGTATTTGATTACA ATTTGTCTTGTTTGTTTCACAGGTTTGGTGTTTCCTGCTTCCAAATTCATGCTTTGCTGA
AA sequence Show only first row Show all	>Potri.001G470800.1 pacid=42787591 polypeptide=Potri.001G470800.1.p locus=Potri.001G470800 ID=Potri.001G470800.1.v4.1 annot-version=v4.1 MAQMKDAHIVEIPVDEEHQQKLICAMNTIKAIQNHPLAEISNSPGHLLLLKLWQREEDLFGRRIALKESRMDSIKREIFQLCCFFLVFHGFFLTILFTSS VDSKEHSCKNWWIPSLVSVCTSLVFVFLVQVKVCRYWKVWRQLQREKNDNRALTRCIQELRMKGASFDLSKEPLSGKKMKSSSVEIKWKPLTWCSQYLIT ICLVCFTGLVFPASKFMLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56120			unknown protein		Potri.001G470800 [exp]	0	1
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.013G048900 [exp]	1.00	0.9806	Pt-CDC20.4
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Potri.010G202100 [exp]	2.44	0.9684
AT3G17360		POK1	phragmoplast orienting kinesin...		Potri.010G153000 [exp]	2.82	0.9622
AT2G20635			ATP binding;protein kinases;pr...		Potri.007G139000 [exp]	5.29	0.9563
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.012G054400 [exp]	6.24	0.9632
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.019G021800 [exp]	6.32	0.9535	Pt-CDC20.3
AT3G44050			P-loop containing nucleoside t...		Potri.004G193700 [exp]	6.48	0.9594
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.017G013100 [exp]	8.06	0.9595
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Potri.002G235500 [exp]	8.12	0.9522	PAKRP1.2
AT3G44050			P-loop containing nucleoside t...		Potri.009G156000 [exp]	10.95	0.9530

Compare expression of checked genes

Potri.001G470800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.