Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56130 586 / 0 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 98 / 2e-22 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G43770 85 / 1e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 86 / 2e-18 transducin family protein / WD-40 repeat family protein (.1.2) AT3G49660 79 / 2e-16 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 75 / 4e-15 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 76 / 7e-15 TAF5 TBP-associated factor 5 (.1) AT5G43920 69 / 6e-13 transducin family protein / WD-40 repeat family protein (.1) AT4G29830 67 / 3e-12 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18140 65 / 8e-12 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050100 [exp] 91 / 6e-20 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G144400 [exp] 89 / 2e-19 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.002G051900 [exp] 84 / 2e-18 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G206600 [exp] 85 / 5e-18 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G096900 [exp] 80 / 1e-16 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 76 / 2e-15 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 74 / 9e-15 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.006G045800 [exp] 74 / 1e-14 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.018G020200 [exp] 74 / 1e-14 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008356 [exp] 600 / 0 AT5G56130 583 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027113 [exp] 571 / 0 AT5G56130 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024972 [exp] 85 / 4e-18 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10004167 [exp] 85 / 6e-18 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 82 / 2e-17 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 82 / 4e-17 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10006916 [exp] 80 / 6e-17 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 80 / 1e-16 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 79 / 2e-16 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 79 / 3e-16 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G470900.1 pacid=42790582 polypeptide=Potri.001G470900.1.p locus=Potri.001G470900 ID=Potri.001G470900.1.v4.1 annot-version=v4.1 ATGGAGGAAACGATACCGTTTAAGAATCTCCATAGCAGAGAGTATCAAGGTCACAAAAAGAAGGTTCACTCAGTGGCATGGAATTGCACTGGAACTAAGC TTGCTTCAGGTTCTGTTGATCAAACTGCTCGTGTTTGGCACATTGATCTTCATGGCCATGGTAAAATTAAGGATATTGAATTGAAGGGGCATGCAGATAG TGTGGATCAGCTTTGTTGGGATCCTAAGCATGCTGATTTAATTGCAACTGCTTCCGGTGACAAGACTGTCCGTTTATGGGATGCTCGTAGTGGGAAGTGC TCACAGCAAACAGAACTTAGTGGGGAGAATATAAACATCACCTACAGGCCTGATGGCACTCATGTTGCTGTTGGTAATAGGGATGATGAGCTAACTATAC TGGATGTTCGAAAATTTAAGCCAATTCATAGGAGGAAGTTCAATTATGAGGTAAATGAGATTGCTTGGAACATGACAGGGGAGATGTTCCTTTTGACTAC TGGGAATGGTACTGTTGAAGTACTATCATACCCATCTCTTCAACCACTTGAAACTGTCATGGCTCATACAGCTGGTTGCTACTGCATTGCAATTGATCCA AAAGGAAGATATTTTGCTGTTGGAAGTGCTGATTCCTTAGTCAGCCTTTGGGATATCTCAGAAATGCTTTGCGTGCGAACATTTACGAAACTTGAATGGC CTGTCCGGACAATAAGCTTCAATCACACAGGAGATTTTATTGCTTCTGCCAGTGAAGACTTATTCATAGATATTTCCAATGTCCATACTGGGCGATCAGT GCATCAAATCCCATGCCGTGCTGCCATGAACAGTGTGGAGTGGAACCCCAAGTACAATTTACTTGCTTATGCTGGGGATGACAAGAACAAATATCAGACT GATGAAGGTGTTTTTCGAATATTTGGCTTTGAGAGCGCCTGA
AA sequence Show only first row Show all	>Potri.001G470900.1 pacid=42790582 polypeptide=Potri.001G470900.1.p locus=Potri.001G470900 ID=Potri.001G470900.1.v4.1 annot-version=v4.1 MEETIPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIDLHGHGKIKDIELKGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC SQQTELSGENINITYRPDGTHVAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFLLTTGNGTVEVLSYPSLQPLETVMAHTAGCYCIAIDP KGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNHTGDFIASASEDLFIDISNVHTGRSVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQT DEGVFRIFGFESA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Potri.001G470900 [exp]	0	1
AT1G03330			Small nuclear ribonucleoprotei...		Potri.003G014900 [exp]	4.47	0.7619
AT2G37560		ATORC2	origin recognition complex sec...		Potri.003G094800 [exp]	6.00	0.7369	Pt-ORC2.1
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	6.92	0.7588
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Potri.019G040000 [exp]	8.94	0.7772
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Potri.005G181300 [exp]	8.94	0.7318
AT4G39280			phenylalanyl-tRNA synthetase, ...		Potri.004G155000 [exp]	12.24	0.6861
AT5G59970			Histone superfamily protein (....		Potri.008G047500 [exp]	13.11	0.7488
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Potri.003G048700 [exp]	14.38	0.7281
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Potri.019G050100 [exp]	14.86	0.7071
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Potri.005G019800 [exp]	16.97	0.7009

Compare expression of checked genes

Potri.001G470900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.