Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56140 426 / 5e-151 RNA-binding KH domain-containing protein (.1) AT4G26480 423 / 4e-150 RNA-binding KH domain-containing protein (.1) AT2G38610 275 / 5e-92 RNA-binding KH domain-containing protein (.1.2) AT3G08620 271 / 2e-90 RNA-binding KH domain-containing protein (.1) AT1G09660 263 / 3e-87 RNA-binding KH domain-containing protein (.1.2) AT5G51300 100 / 2e-23 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G168000 [exp] 503 / 0 AT5G56140 427 / 8e-152 RNA-binding KH domain-containing protein (.1) Potri.006G111400 [exp] 290 / 6e-98 AT2G38610 467 / 4e-168 RNA-binding KH domain-containing protein (.1.2) Potri.016G140800 [exp] 285 / 6e-96 AT2G38610 456 / 7e-164 RNA-binding KH domain-containing protein (.1.2) Potri.019G132100 [exp] 274 / 6e-92 AT2G38610 381 / 3e-134 RNA-binding KH domain-containing protein (.1.2) Potri.004G225900 [exp] 271 / 1e-90 AT1G09660 334 / 2e-115 RNA-binding KH domain-containing protein (.1.2) Potri.003G005500 [exp] 269 / 1e-89 AT1G09660 335 / 8e-116 RNA-binding KH domain-containing protein (.1.2) Potri.013G159800 [exp] 267 / 5e-89 AT2G38610 408 / 7e-145 RNA-binding KH domain-containing protein (.1.2) Potri.003G107200 [exp] 102 / 3e-24 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.001G126400 [exp] 102 / 3e-24 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003241 [exp] 293 / 2e-99 AT2G38610 488 / 1e-176 RNA-binding KH domain-containing protein (.1.2) Lus10035608 [exp] 290 / 7e-98 AT2G38610 494 / 6e-179 RNA-binding KH domain-containing protein (.1.2) Lus10037344 [exp] 267 / 5e-89 AT1G09660 400 / 1e-141 RNA-binding KH domain-containing protein (.1.2) Lus10035768 [exp] 265 / 7e-88 AT1G09660 399 / 7e-141 RNA-binding KH domain-containing protein (.1.2) Lus10034443 [exp] 264 / 2e-87 AT2G38610 327 / 3e-112 RNA-binding KH domain-containing protein (.1.2) Lus10021676 [exp] 258 / 5e-85 AT2G38610 314 / 1e-107 RNA-binding KH domain-containing protein (.1.2) Lus10035015 [exp] 256 / 1e-84 AT2G38610 315 / 5e-108 RNA-binding KH domain-containing protein (.1.2) Lus10019116 [exp] 234 / 2e-76 AT2G38610 275 / 7e-93 RNA-binding KH domain-containing protein (.1.2) Lus10038932 [exp] 102 / 5e-24 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G471000.1 pacid=42790885 polypeptide=Potri.001G471000.1.p locus=Potri.001G471000 ID=Potri.001G471000.1.v4.1 annot-version=v4.1 ATGACCACCACTGGCGGCGTCGGCGTCGGCGTCGGTGCTGGTCGCTTTATGGCTTACTCTCCGTCTCCATCTGCTCCTCACTCGCCTCATATCTCTGGTC TTCGCTCATCGGCAGCTTCCTCTGCTCTTGTTGTTGAGCAAGAAAAATATTTGTCGGAGTTGTTGGCAGAGCGTCACAAGATTAGTCCCTTTTTGCCTGT GCTTCCTAATACCTACCGGCTGTTGAACCAAGAAATATTGCGTGTAACTATGCTGTTGGGGAATGCGTCAGTTTTAGGTCAAAGTGGGCTTGAACATGCT AGCCCTCTGGCTTCTGGAGGAATATTTTCAAATGGAGCAGCTGATGCAAATGGATGGGCATCACGGTTTCAATCAGAAATGTCAGGTATTTTACAGCCCT CATCAGCACAAAACTGGCTGAGCTCTCAAGGTAGCTCATCTGGTCTTATTGTTAAGAGAACCATCAGAGTGGATATTCCTGTCGACAAATATCCTAATTA CAACTTCGTTGGGCGCCTTCTTGGTCCTAGGGGAAACTCCCTTAAGCGAGTGGAAGCAAGCACAGAGTGCCGTGTTCTGATCAGAGGCCGTGGCAGCATT AAGGATCCAGCCAGGGAAGATATGATGAGAGGGAAACCAGGGTATGAGCATCTAAATGAACCTCTGCACATCCTGGTTGAGGGTGAATTGCCAGTTGAAA TAGTTGATGCTCGACTAATGCAGGCACGGGAGATACTCGAAGACTTGTTGAGGCCCGTGGATGAATCTCAGGATTACTACAAGAAGCAGCAGCTAAGAGA GCTAGCGTTGCTTAATGGTACATTTCGTGAGGAAGGTTCTCCCATGTCAGGTTCCGTCTCCCCCTTTAACAACAGCCTTGGTATGAAGAGGGCCAAGACA AGGGGGTAG
AA sequence Show only first row Show all	>Potri.001G471000.1 pacid=42790885 polypeptide=Potri.001G471000.1.p locus=Potri.001G471000 ID=Potri.001G471000.1.v4.1 annot-version=v4.1 MTTTGGVGVGVGAGRFMAYSPSPSAPHSPHISGLRSSAASSALVVEQEKYLSELLAERHKISPFLPVLPNTYRLLNQEILRVTMLLGNASVLGQSGLEHA SPLASGGIFSNGAADANGWASRFQSEMSGILQPSSAQNWLSSQGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSI KDPAREDMMRGKPGYEHLNEPLHILVEGELPVEIVDARLMQAREILEDLLRPVDESQDYYKKQQLRELALLNGTFREEGSPMSGSVSPFNNSLGMKRAKT RG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56140			RNA-binding KH domain-containi...		Potri.001G471000 [exp]	0	1
AT3G45040			phosphatidate cytidylyltransfe...		Potri.009G007900 [exp]	3.74	0.7931
					Potri.005G203550 [exp]	9.21	0.7985
AT5G43150			unknown protein		Potri.008G152200 [exp]	10.39	0.8121
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.010G180500 [exp]	14.83	0.7796
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Potri.016G115300 [exp]	21.84	0.7923
AT5G18940			Mo25 family protein (.1.2)		Potri.008G198900 [exp]	24.49	0.7926
AT5G13070			MSF1-like family protein (.1)		Potri.001G018500 [exp]	28.98	0.7177
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G257300 [exp]	30.59	0.7599
AT2G44500			O-fucosyltransferase family pr...		Potri.001G227000 [exp]	31.11	0.7613
					Potri.004G137402 [exp]	32.07	0.6713

Compare expression of checked genes

Potri.001G471000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.