Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26470 331 / 3e-116 Calcium-binding EF-hand family protein (.1.2) AT3G24110 179 / 2e-56 Calcium-binding EF-hand family protein (.1) AT1G76040 69 / 7e-14 CPK29 calcium-dependent protein kinase 29 (.1.2) AT2G41100 63 / 9e-12 ATCAL4, TCH3 TOUCH 3, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, Calcium-binding EF hand family protein (.1.2.3.4) AT5G12180 64 / 1e-11 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 64 / 1e-11 CPK34 calcium-dependent protein kinase 34 (.1) AT4G04700 62 / 5e-11 CPK27 calcium-dependent protein kinase 27 (.1) AT5G19450 62 / 6e-11 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT4G04695 61 / 1e-10 CPK31 calcium-dependent protein kinase 31 (.1) AT4G21940 61 / 1e-10 CPK15 calcium-dependent protein kinase 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314900 [exp] 230 / 2e-76 AT3G24110 216 / 1e-70 Calcium-binding EF-hand family protein (.1) Potri.017G054902 [exp] 102 / 2e-27 AT3G24110 70 / 3e-15 Calcium-binding EF-hand family protein (.1) Potri.001G257100 [exp] 66 / 1e-12 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.006G065900 [exp] 65 / 2e-12 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.004G015500 [exp] 65 / 5e-12 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.011G003400 [exp] 64 / 8e-12 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.009G052700 [exp] 64 / 1e-11 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.018G127100 [exp] 62 / 2e-11 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.005G215700 [exp] 59 / 6e-11 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008357 [exp] 297 / 8e-103 AT4G26470 290 / 6e-100 Calcium-binding EF-hand family protein (.1.2) Lus10016675 [exp] 185 / 2e-58 AT3G24110 203 / 2e-65 Calcium-binding EF-hand family protein (.1) Lus10027114 [exp] 171 / 6e-54 AT4G26470 165 / 6e-52 Calcium-binding EF-hand family protein (.1.2) Lus10027361 [exp] 70 / 1e-13 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10030134 [exp] 69 / 2e-13 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10009947 [exp] 68 / 5e-13 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10002075 [exp] 63 / 1e-11 AT4G04720 536 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10032640 [exp] 63 / 3e-11 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10017251 [exp] 62 / 4e-11 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10018012 [exp] 59 / 8e-11 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G471100.2 pacid=42787917 polypeptide=Potri.001G471100.2.p locus=Potri.001G471100 ID=Potri.001G471100.2.v4.1 annot-version=v4.1 ATGGGAGGTGCAGTGGGAAAGGCTGGTTCACCTCAAAAGGCATGGATACCGGAAACAAAAATTGAAACAAAAGTGGTCGAAGCTATGCGGCGGAGGGAAA CTCATGGAAGTTCAATAAAATCATTCAACAGCATAATCTTAAAATTCCCAAAAATAGATGAAAGCTTCAGAAAATGTAAAGCTACTTTTGAGCAATTTGA TGAAGATTCCAATGGGTCCATTGATAAGGAAGAGCTCCGGAAATGTTTCCATAAGCTGGAGACTGCGTTTACAGACGAAGAAATAAACGATCTCTTCGAG ACATGTGATGTTAATGAGGACATGGGCATGAAGTTCAATGAGTTCATTGTACTTCTCTGTCTTGTCTATCTTCTCAAGGATGATCCTGCTATCCCTCAAG CTAAATCACGAATAGGCATGCCGGATTTGGAGGCCACATTTGAAACACTGGTTGGGGCCTTTGTGTTCTTAGACAAGAACAAGGACGGTTACGTCAGCAA GAGTGAGATGGTACAAGCCATAAATGAATCTGGGGAACGTTCGTCTGGACGAATAGCCATGAAAAGATTTGAAGAGATGGACTGGGATAGAAACGGAATG GTGAATTTCAAGGAGTTTCTGTTTGCTTTCACTAATTGGGTTGGGATCGATGACAACGAAGATGAGGAGGACTGA
AA sequence Show only first row Show all	>Potri.001G471100.2 pacid=42787917 polypeptide=Potri.001G471100.2.p locus=Potri.001G471100 ID=Potri.001G471100.2.v4.1 annot-version=v4.1 MGGAVGKAGSPQKAWIPETKIETKVVEAMRRRETHGSSIKSFNSIILKFPKIDESFRKCKATFEQFDEDSNGSIDKEELRKCFHKLETAFTDEEINDLFE TCDVNEDMGMKFNEFIVLLCLVYLLKDDPAIPQAKSRIGMPDLEATFETLVGAFVFLDKNKDGYVSKSEMVQAINESGERSSGRIAMKRFEEMDWDRNGM VNFKEFLFAFTNWVGIDDNEDEED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26470			Calcium-binding EF-hand family...		Potri.001G471100 [exp]	0	1
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.010G108200 [exp]	1.00	0.8722
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Potri.018G096084 [exp]	1.73	0.8422
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134300 [exp]	6.92	0.8380
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.012G070900 [exp]	9.59	0.8608
AT3G01400			ARM repeat superfamily protein...		Potri.002G118800 [exp]	10.39	0.8229
					Potri.002G057450 [exp]	10.81	0.8045
AT1G18210			Calcium-binding EF-hand family...		Potri.012G048200 [exp]	11.22	0.8107	Pt-CBL1.1
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Potri.005G213500 [exp]	14.00	0.7886	Pt-SULTR3.5
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.016G133500 [exp]	16.12	0.7925
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Potri.006G092400 [exp]	19.67	0.7806

Compare expression of checked genes

Potri.001G471100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.