Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55690 714 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT5G56160 538 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39170 457 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 447 / 8e-150 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G24840 434 / 1e-145 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G75370 428 / 9e-143 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 426 / 4e-142 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39180 385 / 7e-127 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21540 376 / 2e-123 ATSFH3 SEC14-like 3 (.1.2.3) AT4G34580 364 / 1e-118 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G168300 [exp] 1042 / 0 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G243000 [exp] 488 / 2e-165 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.009G119500 [exp] 482 / 9e-164 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 481 / 3e-163 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 449 / 5e-151 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 443 / 3e-148 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119400 [exp] 390 / 4e-128 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.005G119700 [exp] 383 / 1e-125 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 376 / 2e-123 AT4G36490 731 / 0.0 SEC14-like 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008360 [exp] 671 / 0 AT1G55690 668 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10022790 [exp] 463 / 8e-157 AT3G24840 650 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10042302 [exp] 442 / 1e-147 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023546 [exp] 436 / 1e-145 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 435 / 1e-144 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 421 / 1e-139 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10011853 [exp] 416 / 7e-139 AT3G24840 576 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10038176 [exp] 387 / 2e-127 AT3G24840 551 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025924 [exp] 379 / 2e-124 AT3G24840 520 / 7e-180 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028332 [exp] 358 / 5e-116 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G471300.5 pacid=42791992 polypeptide=Potri.001G471300.5.p locus=Potri.001G471300 ID=Potri.001G471300.5.v4.1 annot-version=v4.1 ATGTCAGGTGTTGAAGGAATCGTGGTTAATGATGAAAATAGAGAGAGAAGATCTGATTTTGAGAACTCTGAAGATGAAAGACGACGGTCAAAAATTGGTA ATTTCAAGAAAAAGGCTTTGAACGCTTCAAATAAGCTCACCCACTCCTTTAAGAAAAGAGGGAAAAGGATAATAGATAATGGGGTTTCGTCAGTTTCCAT AGAAGATGTAAGGGATGCAAAAGAGGAGAGTGCTGTCCATGAATTGCGCCAAAAGCTTCTTGAAAGAGATTTGTTGCCTCCTGGGCATGATGACTATCAT ACTTTGTTAAGATTTTTGAAAGCAAGAGAGTTTAACATTGATAAAACAATCCAGATGTGGGAAGAAATGCTTAACTGGAGGAAAGAATACGGGACAGACT CCATTCTAGAGGATTTTGAGTTTGAGGAGCTGGAGGAAGTCTTGCAATTTTACCCTCACGGTTACCATGGAGTTGATAAGGAAGGCCGGCCAGTTTACAT TGAGAGGCTTGGAAAAGCTCATCCGAGCAAGCTAATGCGTATCACCACTATAGAACGGTATTTGAAGTACCATGTCCAGGAGTTTGAAAGGGCTATACAG GAAAAATTCTCTGCTTGTTCTATTGCTGCAAAAAGACGGATATGTTCAACTACAACCATATTGGATGTGCAAGGTTTGGGCATTAAGAATTTTACTCGGA CCGCTGCAACTCTCTTGGGTGGCGTGACAAAAATAGATAGCAGTTATTACCCTGAGACATTGCACCGAATGTTTATTGTCAATGCTGGTCCTGGCTTTAA GAAGATGCTATGGCCTGTGGCCCAGAAATTTCTGGATGCACAGACCATTGCAAAGATACAGGTTTTGGAGCCCAGATCCCTGCCTAAGCTACTGGAAGTT ATTGAATCAAGTCAATTGCCAGACTTCTTGGGTGGTTCTTGCTCTTGTTCGGCTGAAGGAGAATGCCTTAGATCCAGTAAAGGTCCATGGAATGATCCTG AAATATTGAAGCTTGTACATAATGCAGAACCAATATTTGTGACGGAAATCTCCAGAGTGTCTAATGAAAAGCAGGCATTTGACTCGTATATTCAGATACA CCCTCTGAAGGGAAAAAGCAGTGATAGAGTGACAGCAGAATCAGGGTCAGATATTGATGATCCTTCTTCTCCATTCAGACAAAAAAATTCTACATTTCCA TGCTCGACCCCGGTTGATGAAGAAGCGAGGGCATCGGATCCAAGTATCTACTACAGTTGTGATGATAATTTTACTCTGGCTGAGAAAACTGTGCTTAGAG GGGATTATTCTGAGGACCAATCACTTGAAATCAACAATTTGGGGAACATTCCCCATGAAGTGACATCAAACCTGGAAGGTTTATTCATCCGTTGGTTTGA CTTTGTCAAGGAAAAGGTTGGGAAAACAAGTATCCCAAATGCGACAAGAACCTTGTTATCATTCGTGATCAAGCTATTTGCACTTTGTCGTAGTCTACCA TTTGAATATTGGAGAAGGCAGAACAACATTTATCCATCTAATTTGATGGAACATAACACAGATGTCCATTCAACTGCTGCTGAAGCTATGAATGAAGAAG ACCATGTCCGTCCATGTATATATCGTCTTCAGAGACTAGAGAAAATATACGAGGAACTTAGCAAAAGGCCTGCTGTAATCCCTTTGGAAAAGGAGAAAAT GCTAACAGAATCTCTGGAGAGGATAAAGTCTGTGGAGTCTGACCTTGAGAAAACAAAGACGTTGTGCTCACAGGTACTGCATACTACAGTGGTAAAGCAA CTCGAGATTGCTAAGTTGCTAGACAATTTACGGGAGTCTAAATGTCGTCAAAGAAGATTGTTCTGCTGA
AA sequence Show only first row Show all	>Potri.001G471300.5 pacid=42791992 polypeptide=Potri.001G471300.5.p locus=Potri.001G471300 ID=Potri.001G471300.5.v4.1 annot-version=v4.1 MSGVEGIVVNDENRERRSDFENSEDERRRSKIGNFKKKALNASNKLTHSFKKRGKRIIDNGVSSVSIEDVRDAKEESAVHELRQKLLERDLLPPGHDDYH TLLRFLKAREFNIDKTIQMWEEMLNWRKEYGTDSILEDFEFEELEEVLQFYPHGYHGVDKEGRPVYIERLGKAHPSKLMRITTIERYLKYHVQEFERAIQ EKFSACSIAAKRRICSTTTILDVQGLGIKNFTRTAATLLGGVTKIDSSYYPETLHRMFIVNAGPGFKKMLWPVAQKFLDAQTIAKIQVLEPRSLPKLLEV IESSQLPDFLGGSCSCSAEGECLRSSKGPWNDPEILKLVHNAEPIFVTEISRVSNEKQAFDSYIQIHPLKGKSSDRVTAESGSDIDDPSSPFRQKNSTFP CSTPVDEEARASDPSIYYSCDDNFTLAEKTVLRGDYSEDQSLEINNLGNIPHEVTSNLEGLFIRWFDFVKEKVGKTSIPNATRTLLSFVIKLFALCRSLP FEYWRRQNNIYPSNLMEHNTDVHSTAAEAMNEEDHVRPCIYRLQRLEKIYEELSKRPAVIPLEKEKMLTESLERIKSVESDLEKTKTLCSQVLHTTVVKQ LEIAKLLDNLRESKCRQRRLFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55690			Sec14p-like phosphatidylinosit...		Potri.001G471300 [exp]	0	1
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.006G117300 [exp]	4.58	0.8166
AT2G19680			Mitochondrial ATP synthase sub...		Potri.018G055501 [exp]	5.09	0.7941
AT4G23840			Leucine-rich repeat (LRR) fami...		Potri.001G092000 [exp]	9.00	0.7932
AT1G16900			Alg9-like mannosyltransferase ...		Potri.001G392050 [exp]	17.43	0.7540
AT1G55630			Pentatricopeptide repeat (PPR)...		Potri.012G141400 [exp]	27.23	0.7266
AT2G34750			RNA polymerase I specific tran...		Potri.007G065101 [exp]	27.56	0.7529
AT2G44200			CBF1-interacting co-repressor ...		Potri.016G000501 [exp]	30.49	0.7837
AT3G62900			CW-type Zinc Finger (.1)		Potri.005G028700 [exp]	31.87	0.7790
AT1G32310			unknown protein		Potri.003G095100 [exp]	34.20	0.7549
AT1G67440		EMB1688	embryo defective 1688, Minichr...		Potri.016G023500 [exp]	35.28	0.7579

Compare expression of checked genes

Potri.001G471300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.