Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 332 / 8e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 329 / 1e-106 MEF21 mitochondrial editing factor 21 (.1) AT5G56310 317 / 3e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 315 / 3e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 314 / 1e-99 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 301 / 4e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 298 / 1e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02980 297 / 1e-93 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G42920 290 / 1e-91 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G62890 290 / 2e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G012600 [exp] 347 / 5e-112 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G035900 [exp] 330 / 5e-107 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.003G223900 [exp] 322 / 7e-104 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G231200 [exp] 322 / 4e-103 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G202600 [exp] 320 / 4e-103 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G065500 [exp] 317 / 2e-101 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G237000 [exp] 317 / 4e-101 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 307 / 4e-98 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 309 / 6e-98 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010591 [exp] 547 / 0 AT5G66520 346 / 4e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 335 / 1e-107 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 332 / 3e-106 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 316 / 1e-100 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 315 / 2e-100 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 312 / 6e-99 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 311 / 1e-98 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 310 / 3e-98 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030125 [exp] 303 / 5e-97 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10007341 [exp] 300 / 1e-95 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G471600.1 pacid=42787765 polypeptide=Potri.001G471600.1.p locus=Potri.001G471600 ID=Potri.001G471600.1.v4.1 annot-version=v4.1 ATGGCCTCTTTTCTAACAAAATCTCCTCTTCCCATGGACAGAAATCTACTTCTCACAACTTCAACTAGAGCACCAGCTACCATTATCTCACTTCGAACGT GCCACGACTTCCAGGAAGTGAAACAATTACATGCCCAGTTTGTTGTGTCAGGACTCCTTGGTTATCATCCTTTGTGTGCTAGGAGGCTCCTCGAGGCTTA TGTTACTATGTCACAGATTTATTATGCCTTTTCGATCTTTGAGAGAATACCTTCTCCTGATGTGTTTGTTTATAACACCATGATTAGAGGCCTAACAATG GGTAAGTTTCTTCATGATTCTTTGTTACTGTATAAAGAATTCCTATTTGGGTACCTTGTACCAGACAACTTCACTTACACCTTTGTCCTCAAGGCATGCT CCCATTTGAAAGCTCCTTTTGAAGGTAAACAAGTGCATTGCCAGATAATTAAGGCAGGAATAGTACCAGATACTCATATCCATAGCTCCTTAATTCATAT GTACACTAATTCAGGAAGCATAGACGATGCAGAACGTGTTCTTGGAGAATTCTCGGAAGAGAACACACTTGCTAAGAATGCCATGATTTCAGGTTACTTG ACCGAGGGTCGTGTAGACAAGGCTAGAAAAATGTTTGATGACATGGCAGCGAAAGATGCAGCATCTTGGAGTGCATTAATAACAGGATATACAAAGAATG GTATGCACACTGAGGCATTAGCTCTTTTTCAAGACATGATGGTTTCACACATCCTGCCAAATGAAGCAGCACTGGTGAGCCTGCTCTCTGCCTGTGGACA ATTAGGAACATTGCATCAGGGAAGATGGATACATGCGTACATTGATAAAACTAGAGTTTTGATGAGCACTAAACTCACTACTGCTCTCATCGATATGTAT GCTAAGAGTGGAAGCATTGAGTGTGGCTATGGATTATTTCAGAAAATGGCCCGGAGAGACGTTGTAACTTGGGGAGTTATGATTTCAGCTTTTGCCATCC ATGGCCATGCTAGCAAATGTTTTCAACTGTTTGATGAGATGCTTGCTGATGGGATTCGTCCAAATAAAGTCATATTTGTGGCCATACTTTCAGCCTGCTC TCATGCTGGTTGTGTTGAAGAAGGACGACAATATTTCAGTCAAATGGAACATGGTTTCGGAATAAAACCATCTATTGAACATTATGGATGCATGGTAGAC CTCCTTGGCCGTGCCGGGCTACTGGCAGACGCAGAACAACTGATCCTTTCAATGCCAAAACAGCCTAATTCGATCATCTGGGGTTCATTGCTAGGTGCTT GTAGAACTCACAATGACCTCAAGAGAGGGACTTGGGCCTTCGAGAACTTGATGGAGCTTGAGCCGACATCAGGGGACCGGCACAAATTAGCAGGGCTCAT GTTTGCTAATGCAGGAGAGAAGGAAGAAGCTGCTAAGATAAGGAAGATGATCCATGAAAAAGAAATGGTGACAACTTGTGGATCTAGTTTCATTGAGGTG GAAGGCGCGGTCCATGAGTTCACAGTGGGTTATACTGTTCATAATAAAGCAAGAGATATATGA
AA sequence Show only first row Show all	>Potri.001G471600.1 pacid=42787765 polypeptide=Potri.001G471600.1.p locus=Potri.001G471600 ID=Potri.001G471600.1.v4.1 annot-version=v4.1 MASFLTKSPLPMDRNLLLTTSTRAPATIISLRTCHDFQEVKQLHAQFVVSGLLGYHPLCARRLLEAYVTMSQIYYAFSIFERIPSPDVFVYNTMIRGLTM GKFLHDSLLLYKEFLFGYLVPDNFTYTFVLKACSHLKAPFEGKQVHCQIIKAGIVPDTHIHSSLIHMYTNSGSIDDAERVLGEFSEENTLAKNAMISGYL TEGRVDKARKMFDDMAAKDAASWSALITGYTKNGMHTEALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQGRWIHAYIDKTRVLMSTKLTTALIDMY AKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIRPNKVIFVAILSACSHAGCVEEGRQYFSQMEHGFGIKPSIEHYGCMVD LLGRAGLLADAEQLILSMPKQPNSIIWGSLLGACRTHNDLKRGTWAFENLMELEPTSGDRHKLAGLMFANAGEKEEAAKIRKMIHEKEMVTTCGSSFIEV EGAVHEFTVGYTVHNKARDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20540		MEF21	mitochondrial editing factor ...		Potri.001G471600 [exp]	0	1
AT5G05280			RING/U-box superfamily protein...		Potri.019G130100 [exp]	5.56	0.9402
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Potri.011G025200 [exp]	7.14	0.9330
					Potri.017G079000 [exp]	7.93	0.9257
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Potri.019G034000 [exp]	8.60	0.9362
AT3G62550			Adenine nucleotide alpha hydro...		Potri.014G122000 [exp]	14.07	0.9261
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.019G093400 [exp]	14.66	0.9264
AT1G51100			unknown protein		Potri.011G132900 [exp]	16.49	0.9277
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Potri.001G438500 [exp]	22.53	0.8484
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Potri.014G141500 [exp]	24.00	0.9062	Pt-ACD32.1
					Potri.002G021900 [exp]	27.54	0.8711

Compare expression of checked genes

Potri.001G471600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.