Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ARP8.2,ARP908
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56180 672 / 0 ATARP8 actin-related protein 8 (.1.2) AT2G42090 138 / 2e-36 ACT9 actin 9 (.1) AT3G12110 137 / 5e-36 ACT11 actin-11 (.1) AT3G53750 135 / 2e-35 ACT3 actin 3 (.1) AT2G37620 135 / 2e-35 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT5G09810 133 / 1e-34 ACT2/7, ACT7 actin 7 (.1) AT2G42100 133 / 1e-34 Actin-like ATPase superfamily protein (.1) AT3G46520 130 / 2e-33 ACT12 actin-12 (.1) AT1G49240 129 / 5e-33 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G18780 129 / 5e-33 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471400 [exp] 718 / 0 AT5G56180 630 / 0.0 actin-related protein 8 (.1.2) Potri.006G139900 [exp] 140 / 5e-37 AT5G09810 554 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 135 / 1e-35 AT5G09810 731 / 0.0 actin 7 (.1) Potri.006G192700 [exp] 135 / 3e-35 AT3G12110 767 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 135 / 3e-35 AT3G12110 767 / 0.0 actin-11 (.1) Potri.010G204300 [exp] 135 / 3e-35 AT3G12110 733 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 135 / 3e-35 AT3G12110 765 / 0.0 actin-11 (.1) Potri.019G010400 [exp] 134 / 5e-35 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 134 / 6e-35 AT5G09810 775 / 0.0 actin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025605 [exp] 687 / 0 AT5G56180 642 / 0.0 actin-related protein 8 (.1.2) Lus10027083 [exp] 329 / 9e-109 AT5G56180 300 / 7e-99 actin-related protein 8 (.1.2) Lus10005457 [exp] 135 / 4e-35 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 135 / 4e-35 AT3G12110 768 / 0.0 actin-11 (.1) Lus10016558 [exp] 135 / 4e-35 AT3G12110 768 / 0.0 actin-11 (.1) Lus10006783 [exp] 134 / 6e-35 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 134 / 6e-35 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005819 [exp] 134 / 6e-35 AT5G09810 778 / 0.0 actin 7 (.1) Lus10001693 [exp] 133 / 6e-35 AT3G12110 673 / 0.0 actin-11 (.1) Lus10001694 [exp] 133 / 2e-34 AT3G12110 766 / 0.0 actin-11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00022 [poplar] [flax] Actin Actin CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.001G471700.2 pacid=42789222 polypeptide=Potri.001G471700.2.p locus=Potri.001G471700 ID=Potri.001G471700.2.v4.1 annot-version=v4.1 ATGGCGATGCTATTAAAGAAAGTGTGGGAATCGGTGTCGAACAGGGCGACTTCTTTCTCGAGTTCGAGCATTGACTCGGTGACGACTCCACTGAGTTACA CAGAATCATCATCATCTTTGGGAGCTTTTGATCGGCTACCGATTGATGTGGTGTTGCAAATAGTGAGATTGGTGGGGCCAAAAGATGCAGCAAGATTGAG TGTAGTATGCAAGTCATGGAGACCACTTGTATCTGATAATCGCCTGTGGATTTATTTTCTTCAAAATTATCATGATACCTGGGATTCTGTATTTTTTGTT GAGACTCATCTCCGATCCGGGTATCCTATCCAGACATTCTCTAGTCCCATAACAGAGCTGTCATTCATGCGTATATATGGGCAAAGGGTGCAAGTCCCTG GTGCTGTTATTGTTGATGGTGGTTCAGGCCACTGCAAATATGGCTGGAGCAAAAATGCTTGTCCGTCTGGACGGTCAGCTACTTTTTTGGAATTTGGCAA CATTGAATCTCCAATGTACTCCAGGCTTCAACATTTTTTTGCTACTATTTATAGCAGTCTTTACAGGATGCAGGTAAAAGCATCTGCACATCCCATTGTC GTCTCCCTTCCACTTTGCCATTATGATGATACTGAATCTGCTAGAGCATCAAGAAGGCAACTAAAAGACGCTATCTACACAGCTCTTTTCGACATGAACG TTCCAGCTGTTTGTGCCATTAATCAGGCAACTTTAGCACTGTATGCAGCACAACGAACTTCAGGAATTGTTGTTAATATTGGTTTTCAAGTCACATCTGT TGTTCCAATTTTACATGGTAAAGTAATGCGCACAGTGGGTGTGGAAGTCATGGGTGTGGGAGCATTAAAAGTAACAGGATTCCTTAGAGAACAGATGCAG CAGAATAATCTTAATTTTGAATCACTCCACACAGTTCACACATTGAAAGAGAATCTATGTTATGTAGCTGCTGATTATGAAGCTGAACTGTATAAAGACA CTCAAGCATCATTTGAAGTACCTGGAGAAGGATGGTTCACTCTTTCAAAAGAGCGCTTTAAAACAGGGGAGGTCCTATTCCAGCCATGTATTGCTGGAGT GTGTGCAATGGGTTTGCAGCAGGCTGTAGCTCTTTGCATGGACCACTGTCATGCTGCGGAATTAACTGAAGATGATGCTTGGTTCAAGACTATAGTTTTG TCAGGAGGGACTGCTTGTCTCCCAGGACTTGCAGAAAGGCTAGAGAAGGAATTGCATGGACTTCTTCCCCCATCCATTTCTAATGGAATAAGAGTCATTT CTCCTCCTTATGGCGCAGACAGTGCATGGATTGGGGCAAAGCTTATTGGCAATTTGAGCACCTTTCCTGGGTCCTGGTGTGTAAGGAAAAAACAATTTAG ACGGAAGTCCAGATTTACCCTTGCATGGTAA
AA sequence Show only first row Show all	>Potri.001G471700.2 pacid=42789222 polypeptide=Potri.001G471700.2.p locus=Potri.001G471700 ID=Potri.001G471700.2.v4.1 annot-version=v4.1 MAMLLKKVWESVSNRATSFSSSSIDSVTTPLSYTESSSSLGAFDRLPIDVVLQIVRLVGPKDAARLSVVCKSWRPLVSDNRLWIYFLQNYHDTWDSVFFV ETHLRSGYPIQTFSSPITELSFMRIYGQRVQVPGAVIVDGGSGHCKYGWSKNACPSGRSATFLEFGNIESPMYSRLQHFFATIYSSLYRMQVKASAHPIV VSLPLCHYDDTESARASRRQLKDAIYTALFDMNVPAVCAINQATLALYAAQRTSGIVVNIGFQVTSVVPILHGKVMRTVGVEVMGVGALKVTGFLREQMQ QNNLNFESLHTVHTLKENLCYVAADYEAELYKDTQASFEVPGEGWFTLSKERFKTGEVLFQPCIAGVCAMGLQQAVALCMDHCHAAELTEDDAWFKTIVL SGGTACLPGLAERLEKELHGLLPPSISNGIRVISPPYGADSAWIGAKLIGNLSTFPGSWCVRKKQFRRKSRFTLAW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Potri.001G471700 [exp]	0	1	ARP8.2,ARP908
AT4G03020			transducin family protein / WD...		Potri.010G026800 [exp]	1.00	0.8032
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Potri.005G138600 [exp]	3.46	0.6826
AT5G01260			Carbohydrate-binding-like fold...		Potri.016G114500 [exp]	3.87	0.6980
AT4G37280			MRG family protein (.1)		Potri.007G049300 [exp]	7.00	0.6773
AT3G52030			F-box family protein with WD40...		Potri.009G056500 [exp]	12.96	0.6417
AT1G11440			unknown protein		Potri.011G032700 [exp]	16.43	0.6834
					Potri.001G379400 [exp]	18.33	0.7012
AT2G02410			unknown protein		Potri.003G046600 [exp]	20.49	0.6672
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Potri.003G018800 [exp]	29.08	0.6432	Pt-AKT2.1
AT1G43650			nodulin MtN21 /EamA-like trans...		Potri.002G068300 [exp]	33.70	0.6854

Compare expression of checked genes

Potri.001G471700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.