Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13340 736 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G55680 721 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G56190 680 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G78070 504 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) AT1G36070 489 / 2e-172 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 59 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 57 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 55 / 8e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 54 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 52 / 3e-07 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G168600 [exp] 828 / 0 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G000500 [exp] 708 / 0 AT3G13340 683 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G147400 [exp] 617 / 0 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G233700 [exp] 610 / 0 AT3G13340 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G168600 [exp] 515 / 0 AT1G78070 649 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G094100 [exp] 502 / 2e-176 AT1G78070 655 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G000800 [exp] 212 / 2e-67 AT5G56190 201 / 8e-64 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G147500 [exp] 130 / 4e-36 AT3G13340 124 / 2e-34 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G148500 [exp] 64 / 4e-11 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037252 [exp] 712 / 0 AT1G55680 685 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035667 [exp] 711 / 0 AT1G55680 684 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021975 [exp] 631 / 0 AT5G56190 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041268 [exp] 622 / 0 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041102 [exp] 503 / 5e-177 AT1G78070 622 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036428 [exp] 480 / 9e-168 AT1G78070 598 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 61 / 5e-10 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 59 / 2e-09 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 59 / 6e-09 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 57 / 2e-08 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G471800.6 pacid=42789888 polypeptide=Potri.001G471800.6.p locus=Potri.001G471800 ID=Potri.001G471800.6.v4.1 annot-version=v4.1 ATGTCCCATTACCAAGGGGATGATGCTGAATACATGGCAGATGAATATGAAATGGAAGATGTTGATGATGACATGGACGAAGAATTTCGTGCTAGGGAGA TGGGCTCAGACTCTGATGTTGATGAATATGACTACCCGAATAACAAAGTAGCTGACATGTCTGCTGCCGACGCTAGAAATGGAAAAGACATCCAGGGAAT TCCTTGGGAAAGGCTTAGTGTTACTAGAGAGAAATACAGGCAAACAAGGCTAGAACAATACAAGAACTATGAGAACATACCCCATTCTGGGGAAGTTTCA AGAAAGGATTGCAAAATTACTAAAAAGGGGGGCTTGTATTATGAGTTTAGACGAAATTCTAGATCTGTCAAATCAACCATTCTTCATTTTCAGTTGAGGA ACTTGGTTTGGGCCACAACAAAGCATGATGTCTACCTCATGTCAAATTTCTCTGTCACTCATTGGTCCTCCTTAACTTGCAGCAAGTCTGATGTTCTTGA TGTTTCTGGACATGTGGCACCAACTGAGAAACATCCTGGAAGTCTGTTGGAAGGATTCACACAGACTCAAGTTAGTACTCTAGCAGTAAAAGGTAATTTG CTAGTTGCTGGAGGGTTCCAGGGAGAACTTATTTGCAAGCATCTAGATCGGCCTGGAGTAAGCTTTTGTTCCAGAACAACTTATGATGATAATGCCATCA CCAACGCTGTTGAGATTTATGACAGTCCAAGTGGTGCAGTTCACTTCACTGCTTCAAACAATGACTGTGGAGTGAGAGACTTTGATATGGAGAAATATCA GCTCTCAAAGCATTTCTGTTTTCCTTGGCCCGTGAATCATACTTCCCTTAGTCCTGATGGAAAGCTTCTAACAATTGTCGGGGACAACCCAGCTGGTATG TTGGTGGACTCCAGCACTGGAAAGACAGTGGCATCCTTGTCTGGGCATTGGGATTTCTCTTTTGCATCAGCGTGGCATCCTGATGGGGTCACCTTTGCTA CTGGGAACCAGGACAAAACATGCCGCATTTGGGATGCTCGAAACCTGTCCGAGTCAGTTGCTGTTTTGAAGGGAAATCTTGGTGCAATTCGATCAATTCG TTTCACATCTGATGGCCAATATATGGCAATGGCTGAGCCTGCAGATTTTGTGCATGTTTATGATGCAAAAAATGGGTATGAAAAGGAGCAGGAGATTGAT TTCTTTGGTGAGATATCTGGTGTGTCATTCAGTCCTGACACAGAGGCTCTTTACATTGGAGTGTGGGATCGCACATATGGTAGCCTCCTTGAGTATGGCC GTTGCCGGAACTATTCATACCTTGACTCCTTTGTTTGA
AA sequence Show only first row Show all	>Potri.001G471800.6 pacid=42789888 polypeptide=Potri.001G471800.6.p locus=Potri.001G471800 ID=Potri.001G471800.6.v4.1 annot-version=v4.1 MSHYQGDDAEYMADEYEMEDVDDDMDEEFRAREMGSDSDVDEYDYPNNKVADMSAADARNGKDIQGIPWERLSVTREKYRQTRLEQYKNYENIPHSGEVS RKDCKITKKGGLYYEFRRNSRSVKSTILHFQLRNLVWATTKHDVYLMSNFSVTHWSSLTCSKSDVLDVSGHVAPTEKHPGSLLEGFTQTQVSTLAVKGNL LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYDSPSGAVHFTASNNDCGVRDFDMEKYQLSKHFCFPWPVNHTSLSPDGKLLTIVGDNPAGM LVDSSTGKTVASLSGHWDFSFASAWHPDGVTFATGNQDKTCRIWDARNLSESVAVLKGNLGAIRSIRFTSDGQYMAMAEPADFVHVYDAKNGYEKEQEID FFGEISGVSFSPDTEALYIGVWDRTYGSLLEYGRCRNYSYLDSFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13340			Transducin/WD40 repeat-like su...		Potri.001G471800 [exp]	0	1
AT2G25910			3'-5' exonuclease domain-conta...		Potri.018G058900 [exp]	2.82	0.8000
AT1G16650			S-adenosyl-L-methionine-depend...		Potri.007G065300 [exp]	17.29	0.7477
AT1G62330			O-fucosyltransferase family pr...		Potri.011G010600 [exp]	19.28	0.7775
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Potri.002G177600 [exp]	23.76	0.6608	Pt-GIF2.1
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Potri.001G025601 [exp]	23.87	0.7610
AT4G21980		ATG8A, APG8A	AUTOPHAGY-RELATED 8A, AUTOPHAG...		Potri.011G004300 [exp]	24.67	0.7276
AT5G22400			Rho GTPase activating protein ...		Potri.016G078200 [exp]	24.91	0.7239
AT2G01910		ATMAP65-6	Microtubule associated protein...		Potri.008G139700 [exp]	26.66	0.7649
					Potri.004G100301 [exp]	26.83	0.7393
AT1G15740			Leucine-rich repeat family pro...		Potri.006G061700 [exp]	28.39	0.7228

Compare expression of checked genes

Potri.001G471800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.