Plant FIBer expression Database

Potri.001G472000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26455 194 / 1e-54 WIP1 WPP domain interacting protein 1 (.1)
AT5G56210 162 / 5e-43 WIP2 WPP domain interacting protein 2 (.1)
AT3G13360 75 / 5e-14 WIP3 WPP domain interacting protein 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G169000
[exp]
754 / 0 AT5G56210 181 / 8e-50 WPP domain interacting protein 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008336
[exp]
246 / 3e-73 AT4G26455 142 / 2e-36 WPP domain interacting protein 1 (.1)
Lus10027087
[exp]
238 / 5e-70 AT4G26455 140 / 1e-35 WPP domain interacting protein 1 (.1)
PFAM info
Representative CDS sequence
>Potri.001G472000.5 pacid=42792204 polypeptide=Potri.001G472000.5.p locus=Potri.001G472000 ID=Potri.001G472000.5.v4.1 annot-version=v4.1
ATGGATTTGGAGAGTGAAAGTCCTGCGCTTGAATCTGTTGAAGATAGTGAATTAACCACCACCATTCCATCCACAACCCCTGACTGTCCCTTAGATCATG
GTGATGGTGATGGTGATGGTGATGGTGATAACAGTAAGATAAAGGCTAATGGATCATGTTCAAATGGGATAATTCATGACATGGGTGCTAATGGTAATGG
TGATACGAATACATTGCCTCATGATGGAGAAGTTGAGGAAGGTGTGGGAAGTGAGCAAGTGGGGAATTCAGGGAAGTCACCGCCTTCAACGGCCATATCT
CCTGCTGGAGGGTCACCTCCGACTAAGGGATTTGGCTTGAAGAAATGGCGGCGAATTAGGAGAGATGTTGTTAAGGATGCTAGTGTCGATGCAGATAACA
GTAAAGTTTTGAAACGAGTATTCTCTGGTGCTGTGAATCCGGCTGAACCAACAAATTTAAAGCCGGTTGAGGTCATGCAAAACAGCGATGGTTCTTTTGG
ATCGGCTAATCTATTTAGAAATGTGGCTCTTGGTGATGCGTTTGTGACCCGTGGGTCTAGTTTGGAATCTAGATTTATGGTTGCATCTGCTTTCACTGCT
GGCATGGATTCTGAGAATAGTGAGGATCGGAGTAGCAAGTCCTCAACAGCAGCTAGTGCTCCTAGGGTGAGGCATGACCTGCCCGCAGTGTCAGGGTATG
CACGGGACAAGAACAGGGTGAAGAGTTTGAGTGGGAAGGGTGTGGGTAGTTCAGCTCAACAGGTTCAACAAGGGAAGGGATGGGTAGAAAACGGTAAGAA
GCCTAGAGGAGAAAGGGTCAAAATCGAGAAGGAAAACTCTCATTCCAGCATGGAATCTGATTCAAGAAGCTCCAACTTTGTCTTTATGCAGGGTGATTGT
TCTGTGACCAGTAACGGAAAGCAAGGTGGAAGGTCAATGATTTACGACGGAGAAAACAGCGATGAAGCCCATGCAGGTGAACAACAATTCAGCGGGGAAG
TACATACTGGTTATGGGCAGGAGAATGTTGGAGAAGTTGAAGATGTTTCAGAAGATGAATTAGCTGCGGAAGCATCTTGGACAGATAAGGGAGAAAAAAG
GGTTGATCACCGACCCTCGGCAGATCAGGATCAATGGGTTGAGTCTATACTTTCTCTCCAATCCGTGCAAAAAGCTCTTGAAAACGAGGTTCAAAAATTG
GGGGAGATCGGGAAGGTTAGCAGTGTAGTGGAAGATTCCTCTTTAGCTGATCCAGAAATCCATGAATCGAGCTTATCTGACAAGTTTGATTCTGAAAGTT
TCAAAGAATCAAGTTCATTGGAGTTCCAAGTATTAAGCTTAACACAGAATGTAAAATACTTGGAAAGCAGCCTGGAGTTGACCAAGGCTATGCTCAAGAT
GAAGGAGACGGTGGTTGCTGAACTGGAAGCCTCCTTGAATGGTGACAAGTCACCGAAAGAAGAATCAGCGAGTACCGCGGAATTGCAACAAGAGAAATCT
AGAGAGATTGAGAACGAGCTTGAGGGCCTTTTCAAGCAAAAGATCGAGGCTGAGATTAAGTGTCTGGCATTAACAAGGAATCTGCAGAAGTTGAGACTTG
CTGCAGGTGATCAAATCACCCTATTTGAGGAACAACAGGCTCTGGCTGGTGAGCAAGTGCAGATGCTAAATAAGCTAGGAGAAGCAGAAATCAAGGCTGC
GTCACTAAAGAAACAAGCGGAGCAGCTAGAAAAATACTGTGGAGATGTTTTAGGGACCGAAGAGGTGTTTAAGATGCAGAGCAAAGTATGTAAGGTTACT
GCATGTTTTTTCATCCAGTTGATTTTGCTTTTCTTGGTTTTTTGGCTATTAGTGTTGCAGTTATCACCCTCTTCTGGGGTGGTTGCGCCCACTTAA
AA sequence
>Potri.001G472000.5 pacid=42792204 polypeptide=Potri.001G472000.5.p locus=Potri.001G472000 ID=Potri.001G472000.5.v4.1 annot-version=v4.1
MDLESESPALESVEDSELTTTIPSTTPDCPLDHGDGDGDGDGDNSKIKANGSCSNGIIHDMGANGNGDTNTLPHDGEVEEGVGSEQVGNSGKSPPSTAIS
PAGGSPPTKGFGLKKWRRIRRDVVKDASVDADNSKVLKRVFSGAVNPAEPTNLKPVEVMQNSDGSFGSANLFRNVALGDAFVTRGSSLESRFMVASAFTA
GMDSENSEDRSSKSSTAASAPRVRHDLPAVSGYARDKNRVKSLSGKGVGSSAQQVQQGKGWVENGKKPRGERVKIEKENSHSSMESDSRSSNFVFMQGDC
SVTSNGKQGGRSMIYDGENSDEAHAGEQQFSGEVHTGYGQENVGEVEDVSEDELAAEASWTDKGEKRVDHRPSADQDQWVESILSLQSVQKALENEVQKL
GEIGKVSSVVEDSSLADPEIHESSLSDKFDSESFKESSSLEFQVLSLTQNVKYLESSLELTKAMLKMKETVVAELEASLNGDKSPKEESASTAELQQEKS
REIENELEGLFKQKIEAEIKCLALTRNLQKLRLAAGDQITLFEEQQALAGEQVQMLNKLGEAEIKAASLKKQAEQLEKYCGDVLGTEEVFKMQSKVCKVT
ACFFIQLILLFLVFWLLVLQLSPSSGVVAPT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G26455 WIP1 WPP domain interacting protein... Potri.001G472000
[exp]
0 1
AT3G06010 ATCHR12 Homeotic gene regulator (.1) Potri.010G091200
[exp]
5.47 0.8329
AT2G44730 Trihelix Alcohol dehydrogenase transcri... Potri.014G051200
[exp]
5.47 0.7875
AT1G26580 unknown protein Potri.010G159700
[exp]
7.74 0.8033
AT4G21660 proline-rich spliceosome-assoc... Potri.004G039000
[exp]
8.24 0.8300
AT2G47980 SCC3, ATSCC3 sister-chromatid cohesion prot... Potri.002G230800
[exp]
9.38 0.7876
AT1G60670 Protein of unknown function (D... Potri.010G097000
[exp]
9.48 0.7833
AT2G28550 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAG... Potri.008G045300
[exp]
11.00 0.7792
AT5G39570 unknown protein Potri.017G087200
[exp]
26.15 0.7662
AT1G61660 bHLH bHLH112 basic helix-loop-helix (bHLH) ... Potri.011G033000
[exp]
27.62 0.7832
AT3G03440 ARM repeat superfamily protein... Potri.017G128100
[exp]
28.98 0.7543

Potri.001G472000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.