Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56250 203 / 1e-53 HAP8 hapless 8 (.1.2) AT5G56240 194 / 4e-50 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G169100 [exp] 2123 / 0 AT5G56250 177 / 2e-45 hapless 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008344 [exp] 679 / 0 AT5G56240 175 / 3e-44 unknown protein Lus10027098 [exp] 342 / 2e-104 AT5G56250 172 / 4e-46 hapless 8 (.1.2) Lus10000240 [exp] 353 / 1e-103 AT5G56240 121 / 9e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G472400.1 pacid=42789023 polypeptide=Potri.001G472400.1.p locus=Potri.001G472400 ID=Potri.001G472400.1.v4.1 annot-version=v4.1 ATGTTATCCATTGAAAACCCTCCAGTACCAGATCCCTCATGTTCTTCTTCCCAGCTGAATAGTAGTGATGAGAGGGCTTACCAGCTTCCCACCAGTACTA ATAATAAGCTTCCTTCTCCTAATTTGTCAGAGGTAGTAGTAGTAAATCTGCCAAACACAAACCCATCTCTTCATCATCATCATCATACCCCACTTCCTAA TTTCTCCATAAGAGATTATGTATTTAAAGCCAGGAGCAAGGATATCAAGAATAGCTGGCCTTTTTCTCAAAACAATTTGCAACTTTGTTTGAAACATGGC GTGAAGGACGTGTTGCCAAAATTTCAGCCTCATGATACTGTAAGAAACCAGTTCTTTAAGAGATGTACAGGTGAAACCAGTTCAGTTGAGAAGGAAAACA ATTTTGACAAGGAGGCTTCGAGGCCGGACAATCGTGTGCTGCTAGACTCGTCTGATGATGCTCAATTAAATAACAAGCTAGCAGAATCCTGTGTAGACAT TAGTTCATGTAGATCTGGAGAAGAAAATGATTTCCCATCGACAACAACAAGTGAGATAAACTCAGTTCCTGATAACAGGCAACGTAGATCACCATTAGAA ACTCAATCTTTGGCCAAAGCCGCTGTTGAAGTTGAAGCTCCTGTGACCCACAAGACTGAAAGCACCTCCAGGCCGTTGGCTAAGAAGTGCAGGTTGATTG TGAAATTTGGTGGCAGCTCTGATCGTAGCTCAGCTGAAGATATTGCTTCTAATTGTACTACTACATCAGAAACAATGGCTTCAAAAGTTTGTCCTGTTTG CAAAACTTTCTCATCCTCATCAAACACCACCTTGAATGCTCACATTGATCAGTGCCTTTCTGTGGAGTCAACACCCAAGTGGACATCAGATTCTAAGCCA ACAAGGTATAGAATTAAGCCGAGAAAGAATCGGTTGATGGTGGATATTTACGCTACAGCTCAATATTGCACGTTAGAAGACCTTGATCGAAGAAATGGTA CGAGCTGGGCCACCATGTCAAGCTTGCCTGCCCAAGAGACTGAGAAGAGTGACGCACCTAATGAAGGGAAAAAGCAAAGGGTGTCCCCAATTCATCCTGA GGATGCTGCTGATGTAGGTCCAGTTTATATTGATGCAGATGGTACCAAAGTTAGGATTTTATCTCAGTTTAATGATACACCACCAGTAGAAAAAGTAAGC GAGGATATTGGTGCAAGAAGGGAGGATATTGGAGCAAAGAAATCTTTGAAAGGAGGCAAAGCAAGCAAATACATTTCAAAGAAAAAGAAAAAACGCTTAG CACAAAAGCATCAAAAGTATCTAAGACTTGCATCTCAGAGCAAAAAGATTTTCTTCCACAAGGCGCCTTGCGCTCAGATTTCTGGAGGTCAAGAAGAATT TAACGGAGAGGGGAAAAGTTGTGAGAAAGAACAACGGATGTTGAAGCAAATCAATCCCAATGATGGCGGGACTTTAAGACCATGGATTTGCTCCAAACGA AGAGGTTTTCCAAAGAAGATTCCAACTCAAGAGGATCATCAACCTGTGAGATGTAAATGGCATTTGGCTCAAGACTTGCTGGTTGAGAATGATAGTCTTT CAGAGAGGAGCCGCACTCAGAAATCTGTCATTTTGTCTGATAACCCAATATCTTCTCATAGAAACATTGAGAGGACGGAGAAGCCATTTCATAAAGACCA AGTAAATGAGAGTATGGAGCACTCTCCTGGAAGAAAGATGGTAACAAATCTCCCAGTGAGAGACAGGATTAATGGCAAAGTGGATAAGTTGTTTCCACCA ATGAAGTTGAGCAAAGATGGCACTTCTATCCGTGATACCTGTTTGCTAAGACCTCCAGACTCTCCCAGGATAAAGGTCTCTTCACTAACCAAGAAGACAA TCTATACTGATGCTGATACAAGTAATAATTCAGATACCTCTCCCATTGCTAGCACAAAATCATCCCGGAGTTCTCGTACAGTTGTATCTAAAGCATTGAG ATTCTGCTCCTTTAGGAAAAGTGTACTGTCTGTCAGCAGCCAATCTTCTGTGACTGAATCCAGGCCCAGCGAAGTTAGGAAATGGTCAACCCTTGACAAG TCTGAAGACCCTTCGACAACAGAAATAGATGAGGATGCAATGGGCAGGCATTCTGAGGTTGATGAACAGTATGATTTGATGCAGGATCATACAGAAAATG TACTTGAAAGAGAAGAAATAACAGATGAGGTGTCTCTTGGTGGAAGCTCCATCCGGGAAACTAGGCAAGAAAAAAGATTGTCATGTAGTTCTGAAAGGCT GGAAGTCTTGTCTTTGAGGAGCTCAAAATCTACACCTCGCTATGGTCATGATGAGGAGATAAATGTAGATTCTTCAGCTAGATTTGATGATGATGATTAT TTGCGCAAAATTGATCCCCTAGAATCTCCTGGAACACAAGTTCGAATACATGAGGACATTGTTGTTGAACCATCTTCCAAGACTTTGGATGGGAGGACGA GCACCTCTGGTACGAGTAAATCCGTTGACACTGGATTCTATGAGCTAGGTGTTTCTTCAAAGGTCCCATCAAAATGTCTTCGGTCTATTGAACATTATGA AGGACTTTCAAGGCAAAATGATGGGTCAACTGGTCCAACTGAGCCAGGTTTTGTTCACGACCAAGGGATGTTTTCTGCTGCTGAAGCTGGCAATGGCATG ATGGGCCATAATGCTGATATGAGGGTGGTGGAATTGGATTCTGAAGCTGCGAAAGTAGACTCTTTTCCTGAGGTTGATCCCATTCTGATTCCAGGACCAC CGGGGTCATTTTTGCCAAGTCCTAGAGATATGGGCTCTGAAGATTTTCAAGGAAACTCGTCATTGACTAGTAGCCAGGTTCAGTCATCTCCAGATCAGTA TGATGTGATTGATGGAGATTCATCAGATTCCCCTCTATCTGCAGCATCGACCATCTCTAACTCCATGGCTGGCAGACCGGATTTCAATTATTCAGAACCG CCATCATCAGCAGGACATTATGTTTTTCAAGACAATATGAGGTCAGGCTTAATTTCTGCTGGAATTGAACCTTTGGCACAGAATGCTGATGCAGTTCCAC AAGCAGCAACTACAAGAGTTGAAAGAGCTACTTTCTTGGGAGAGCACGTGAAACTTGATGGGATCCCCATTGAGAAGGAATCTTTTGGCTTAAAAAATGA TCAGCCATGCTGTTGCCAAAGAAAGGAGAGGTTTGCTGAGAGTGTTGCTCTAAATCACCAAGAATCACAGCTACTAAGGCGGAGGAAAACGCCATCGATG ACATTTCCTTCTGTTAGCAAGCAAATGGGTTGCAATTCAAACCCAATGCCGATTAATTTGGATGTCAGGCCTGAATTAGTTTCCCTGAACAGTTACTCAG CTTCAGGATCTGAAAAGATGGTTCTCCCACTCATCAAGCCCCCCGGAGATCCTATTCCTTTGAAGGACTCTCCCAATAATTCTGCAGTGAGATCCTTAGC TCGTGCAGATGGTGATTCTGCTAGTCCATCAGCTTCTAATCCTATACTCAGACTGATGGGGAAGAACTTAATGGTGGTCAACAAAGATGATCATGTAGCC ATGCCAATTGGGCAGGTCCAACCTTGTGCTCAAACAATCAATCGAACTCCTCACTTTCCAACAATTTCTGCAGTCTCTCCTGGCAATATTCAGAATCAGG ACAGTCATTCATTTCATCGCGTCACCCCTCAAGGTTTTGCCATCTTTAGTCGGGATCCATATTACAAGACAGCAGTTCAACGTTTTGATGTTGGGTTGTC CAACAGTTTTGGAAGCCACACTGATTCTAAGCTACCCCGGGCACCATCGCAGTTACCAGCAGGCATGTTTTGTGACCAACAAAATGATGGTGGTTTTGTA ACATCCATGAAGCCTCAACAGTGCAAAGATGATTATAATTTCTCAAGTTCTCAGAACAGGCTAAAGAGAAGACTAGATGCGTTTCCTACGTGTACTATGC AGAAAGCTACAGAAACTCCTGACCGCCAGTGCAAGCGTGCAGATTCATCTGCTCATCCTGTAAAAGAAATCATCATCATTGATGATGTTCCTGAAAGTCA AACTGTTGTGATCAGTGACATTACAAGATACAATGAAGGCTGGAGGGAAAGACAAGCAGTTCCATCTGGTATCTCTGTTCCAACCATCCCAGTTTATAAC ATGAGTAATGTGAATCCCTTTACTTGTTATCAGTCACAAGACCACCCTCCACTTGGTGGAACACCATTGTTGCACAATGGCAACTTTCATGCAACTGCCA CTAGGCTAGTTAATACGAGTCCTGTTAGGTGGGGTTGTCCATCGGAAGGTCCCAGCGTGTTGCAACAGAATCCTTTCGTGGCTGCATCAAACTCATCTGG TCATCCAAGATCAGCATCGCTGTATTATTCTCCAAGCTTTTCATAG
AA sequence Show only first row Show all	>Potri.001G472400.1 pacid=42789023 polypeptide=Potri.001G472400.1.p locus=Potri.001G472400 ID=Potri.001G472400.1.v4.1 annot-version=v4.1 MLSIENPPVPDPSCSSSQLNSSDERAYQLPTSTNNKLPSPNLSEVVVVNLPNTNPSLHHHHHTPLPNFSIRDYVFKARSKDIKNSWPFSQNNLQLCLKHG VKDVLPKFQPHDTVRNQFFKRCTGETSSVEKENNFDKEASRPDNRVLLDSSDDAQLNNKLAESCVDISSCRSGEENDFPSTTTSEINSVPDNRQRRSPLE TQSLAKAAVEVEAPVTHKTESTSRPLAKKCRLIVKFGGSSDRSSAEDIASNCTTTSETMASKVCPVCKTFSSSSNTTLNAHIDQCLSVESTPKWTSDSKP TRYRIKPRKNRLMVDIYATAQYCTLEDLDRRNGTSWATMSSLPAQETEKSDAPNEGKKQRVSPIHPEDAADVGPVYIDADGTKVRILSQFNDTPPVEKVS EDIGARREDIGAKKSLKGGKASKYISKKKKKRLAQKHQKYLRLASQSKKIFFHKAPCAQISGGQEEFNGEGKSCEKEQRMLKQINPNDGGTLRPWICSKR RGFPKKIPTQEDHQPVRCKWHLAQDLLVENDSLSERSRTQKSVILSDNPISSHRNIERTEKPFHKDQVNESMEHSPGRKMVTNLPVRDRINGKVDKLFPP MKLSKDGTSIRDTCLLRPPDSPRIKVSSLTKKTIYTDADTSNNSDTSPIASTKSSRSSRTVVSKALRFCSFRKSVLSVSSQSSVTESRPSEVRKWSTLDK SEDPSTTEIDEDAMGRHSEVDEQYDLMQDHTENVLEREEITDEVSLGGSSIRETRQEKRLSCSSERLEVLSLRSSKSTPRYGHDEEINVDSSARFDDDDY LRKIDPLESPGTQVRIHEDIVVEPSSKTLDGRTSTSGTSKSVDTGFYELGVSSKVPSKCLRSIEHYEGLSRQNDGSTGPTEPGFVHDQGMFSAAEAGNGM MGHNADMRVVELDSEAAKVDSFPEVDPILIPGPPGSFLPSPRDMGSEDFQGNSSLTSSQVQSSPDQYDVIDGDSSDSPLSAASTISNSMAGRPDFNYSEP PSSAGHYVFQDNMRSGLISAGIEPLAQNADAVPQAATTRVERATFLGEHVKLDGIPIEKESFGLKNDQPCCCQRKERFAESVALNHQESQLLRRRKTPSM TFPSVSKQMGCNSNPMPINLDVRPELVSLNSYSASGSEKMVLPLIKPPGDPIPLKDSPNNSAVRSLARADGDSASPSASNPILRLMGKNLMVVNKDDHVA MPIGQVQPCAQTINRTPHFPTISAVSPGNIQNQDSHSFHRVTPQGFAIFSRDPYYKTAVQRFDVGLSNSFGSHTDSKLPRAPSQLPAGMFCDQQNDGGFV TSMKPQQCKDDYNFSSSQNRLKRRLDAFPTCTMQKATETPDRQCKRADSSAHPVKEIIIIDDVPESQTVVISDITRYNEGWRERQAVPSGISVPTIPVYN MSNVNPFTCYQSQDHPPLGGTPLLHNGNFHATATRLVNTSPVRWGCPSEGPSVLQQNPFVAASNSSGHPRSASLYYSPSFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56250		HAP8	hapless 8 (.1.2)		Potri.001G472400 [exp]	0	1
AT3G27260		GTE8	global transcription factor gr...		Potri.001G335000 [exp]	3.00	0.8315	GTE903
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	4.89	0.8793
					Potri.004G102400 [exp]	9.00	0.8071
AT3G45830			unknown protein		Potri.009G026100 [exp]	11.04	0.8406
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.005G180800 [exp]	21.63	0.8296	CHB904,CHB4.1
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	22.58	0.8171
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	28.24	0.8169
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.012G073700 [exp]	28.98	0.8084	CCSPK5.3
AT3G17740			unknown protein		Potri.015G033300 [exp]	32.61	0.8148
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.002G159900 [exp]	35.63	0.8069	Pt-CRP.3

Compare expression of checked genes

Potri.001G472400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.