Plant FIBer expression Database

Potri.001G472600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26450 329 / 4e-102 WIP1 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G169200
[exp]
1202 / 0 AT4G26450 323 / 3e-100 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008342
[exp]
533 / 0 AT4G26450 211 / 6e-59 unknown protein
Lus10027095
[exp]
280 / 3e-88 AT4G26450 118 / 2e-29 unknown protein
Lus10027096
[exp]
273 / 3e-85 AT4G26450 116 / 2e-28 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G472600.18 pacid=42788758 polypeptide=Potri.001G472600.18.p locus=Potri.001G472600 ID=Potri.001G472600.18.v4.1 annot-version=v4.1
ATGCATGCTAGGCATAGAAGTCCTGGAAATGGATACAGGTCTGGTGCCATGGGGGTGGGCGTGGGTGCATCCAGGATATCACCAGATACTTCAGCTAGAG
GCCATGGCTTTTACAATTCCGAACACAGAAGCTTCAATAACCGTGGCTTTGGCCGTGGCCAGGGCCACCCCAGATCTATTCGCCAACCTCCTCAGCCACC
GACACAGAAAGGTGATGTTTTGATGGAAGCTGGTAGGCTTGCAGCTGAGTATTTAGTTTCCAAGGGATTGTTACCTCAGAGTGCACTTTCTGGTAAATGG
CAGAATGGTGGTTTCAAAATGCAAGCTGGGGATTATCAGGACTTTAGGCAACAAGAAGACCTTATGCATGAGGGCCGAACATCTGCCCATTCTCGGCTAG
GGAGTGGCGCTTCTGATACTGGACTGAGCAGGAGAAGATACTCTGATGACTTCAATTCGAGGAATCATGTGAAAGGAAGGAGGAGAGGAGAACATTACCG
GGGTTATAGCGCAGAGTGGGGTAGAGAATATGGGAGGAGTGGGCCATTGTCGGATAGGAATAGAGTTTCCCCTGATATGGAGGGTCAGAGTGATACAGTT
TCTGAACACTATGAAGAGCAGCAAGTTAGCAATGATGTTGGTGATGGGATGGAGAAATCTGGTCTGAGTGGGGTGGCACCAGAAAGTGAAGAAACTGCTG
ATATAGAATCAGGACTGAGCAAGTACAACCACCCAGATGAAACTGGCTCCAAGGCAAGTTCTTCTAGTGTTCCGAAAGAAGAGACTGGTGGCGAACCCTC
CAAGGGCTCTGGTGATCCAGCAAACTTAAATCTCGGGAACGGGGAGGTGAAGGATAGCAATTATGATTATGAAACTGAGAAACAGATTGTTCCAGAGGAT
TTACCTATCCAGCAGAGTGCCGTGGAGGGTGACATCTCGGGCAGGAATGGATCTGATTTACTAACATTGAGCAAGTTCGCCAATGTGCCAACGAAAACAC
GCTCTGCATTGTCATGTAGGTCCTCCAGGGTTGATCAAGTTCCCAATAATGAAGATGATGGCACTTCTGGTATTGGGCTTAACAAAGGATCTGAAGATTC
AGTTCAAGATGGCATGTACAATGTTTCTGCAGCTGATGTGCTAGCAAATGCACCTCGTGATTCAAATTGTCCCAACTCTGAAATAACTGAAGTAGCTGTT
GTCCAGTCTGCCGAGGATGTGGATGAAGAAGGCCCTGAATATGGTGCTGTGCAGGGAAAATGTGTGAGGTCTCATTCTTTTCCAGTTAGAGCTTTTATAC
ATGACAATGAACAAGAATCAAGCCTGGGGCCTTCTGGTTTTGGAAGGTCCACCTCAGTCAAAGAGCGAGGAGAGAAACGGGCTGCGGAAGGCAGTGATTT
TAGCGAGGTGGTGAAGAAACCTAGAGAATGGCTTCCATCCTTGGTTAACACCACTGATGAGCTCTTGCACCTCTCTAATTTGAATGAAAATACGGGGGGT
TCTCAAGAAGAGAGGGTTTCACCTGATCAGCAACTTACCATGGCTGCTACTCAAGACACTTATGTTAGTAATTGTCGATTTCCAAGAACTGGTGGTGAAC
CAGGATTCAAGTATGCACAAGAGAAACAGCTTTTTCCTAGTTCATTTAAAATCGTTGATCTTAATCTCATGGAAACATCTGATATGAATGACACACATCG
TAGTGATCCAGTTCTCACACACCCATCTATTATGACAATCGGAAAACAAGCACCACAGGTTGACATTGATTTGTCAATGAGTAATTCCAACATTTCTGGT
GAATATACTAGACATATGACTGATGGTAAGCAGGTTGAAATAATTGATTTAGAGAATGATACCCTGGAAGACAAAGACTTTGATAGTTCACAAAGAAAGA
CGGAGATTGCATTTAATGGGACAGAAGGTTTTCCCAACCATTCACAGAATGTTGGTAATGTTACTGATGTTCAGGATAACTATGATGGTCTTATGCTCTC
AGAGTTTCTCAGCAATTTCCCAAATTGTACCTCTGTTCCGGAGAACATAAATCCACTGCCAAATGAAATGGGCCTTGACAATGGAGAGGGGACTCTTGGT
GATGATGACTCGATTTATATGTCCCTGGGAGAAATACCATTAAGCTTCATACCTGCCTGGGAGCAGCCAACACCGCAGGAGTATGAGAAGCCCTTTTGA
AA sequence
>Potri.001G472600.18 pacid=42788758 polypeptide=Potri.001G472600.18.p locus=Potri.001G472600 ID=Potri.001G472600.18.v4.1 annot-version=v4.1
MHARHRSPGNGYRSGAMGVGVGASRISPDTSARGHGFYNSEHRSFNNRGFGRGQGHPRSIRQPPQPPTQKGDVLMEAGRLAAEYLVSKGLLPQSALSGKW
QNGGFKMQAGDYQDFRQQEDLMHEGRTSAHSRLGSGASDTGLSRRRYSDDFNSRNHVKGRRRGEHYRGYSAEWGREYGRSGPLSDRNRVSPDMEGQSDTV
SEHYEEQQVSNDVGDGMEKSGLSGVAPESEETADIESGLSKYNHPDETGSKASSSSVPKEETGGEPSKGSGDPANLNLGNGEVKDSNYDYETEKQIVPED
LPIQQSAVEGDISGRNGSDLLTLSKFANVPTKTRSALSCRSSRVDQVPNNEDDGTSGIGLNKGSEDSVQDGMYNVSAADVLANAPRDSNCPNSEITEVAV
VQSAEDVDEEGPEYGAVQGKCVRSHSFPVRAFIHDNEQESSLGPSGFGRSTSVKERGEKRAAEGSDFSEVVKKPREWLPSLVNTTDELLHLSNLNENTGG
SQEERVSPDQQLTMAATQDTYVSNCRFPRTGGEPGFKYAQEKQLFPSSFKIVDLNLMETSDMNDTHRSDPVLTHPSIMTIGKQAPQVDIDLSMSNSNISG
EYTRHMTDGKQVEIIDLENDTLEDKDFDSSQRKTEIAFNGTEGFPNHSQNVGNVTDVQDNYDGLMLSEFLSNFPNCTSVPENINPLPNEMGLDNGEGTLG
DDDSIYMSLGEIPLSFIPAWEQPTPQEYEKPF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G26450 WIP1 unknown protein Potri.001G472600
[exp]
0 1
AT1G17620 Late embryogenesis abundant (L... Potri.003G039400
[exp]
3.16 0.8505
AT3G59310 Eukaryotic protein of unknown ... Potri.002G230600
[exp]
3.87 0.7816
AT1G53190 RING/U-box superfamily protein... Potri.011G097100
[exp]
5.47 0.8187
AT4G39080 VHA-A3 vacuolar proton ATPase A3 (.1) Potri.004G160400
[exp]
7.74 0.7921
AT5G57580 Calmodulin-binding protein (.1... Potri.018G095300
[exp]
8.00 0.7959
AT1G28520 VOZ ATVOZ1, VOZ1 vascular plant one zinc finger... Potri.013G123100
[exp]
10.00 0.8285
AT2G28550 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAG... Potri.010G216200
[exp]
10.58 0.7577
AT1G43700 bZIP SUE3, AtbZIP51,... sulphate utilization efficienc... Potri.002G069500
[exp]
13.30 0.8308
AT3G10960 ATAZG1 AZA-guanine resistant1 (.1) Potri.013G083300
[exp]
16.06 0.7967
AT1G07990 SIT4 phosphatase-associated fa... Potri.004G211500
[exp]
16.73 0.6964

Potri.001G472600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.