Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55620 860 / 0 CLCF, ATCLC-F, CLC-F chloride channel F (.1.2) AT4G35440 328 / 2e-101 CLCE, ATCLC-E, CLC-E chloride channel E (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209900 [exp] 311 / 1e-94 AT4G35440 730 / 0.0 chloride channel E (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032888 [exp] 899 / 0 AT1G55620 1052 / 0.0 chloride channel F (.1.2) Lus10027138 [exp] 896 / 0 AT1G55620 1050 / 0.0 chloride channel F (.1.2) Lus10026573 [exp] 167 / 5e-45 AT4G35440 455 / 4e-155 chloride channel E (.1.2) Lus10013857 [exp] 122 / 1e-30 AT4G35440 300 / 1e-96 chloride channel E (.1.2) Lus10013858 [exp] 103 / 2e-24 AT4G35440 171 / 2e-48 chloride channel E (.1.2) Lus10026574 [exp] 97 / 9e-22 AT4G35440 162 / 3e-45 chloride channel E (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain PF00654 [poplar] [flax] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Potri.001G472700.1 pacid=42793634 polypeptide=Potri.001G472700.1.p locus=Potri.001G472700 ID=Potri.001G472700.1.v4.1 annot-version=v4.1 ATGTTGAGAGAAACAATGGAAGACGGCGATCAGAAGCATCTCCTCCTCAAATCCAATTCATCAATTACACAACAACACGATGACCATGACCAACAACCAC TAGTACTTGTTGTAGACAATAACGACTTGGAAGCAGGAGGAGCAGGAGGAGCAGGAGGAGGAGGATTCAACAGAAGCAGCAGTGATAATAGCAGAGGAGG ACATAAGAAGACTGCTGCTATCAAAGATCTGATTCGAGGTTTCTCAGGTCGTCGTCCCTCCTCCTCTCTCAACAACAACAATCTTCATTATAATCATCTA GACGACGAAGACGACGACACTCCATCCATATCAGATCATGACCACCGCAAAAATCGTAATTATGACCACCGTGTTAAGAATATTAATGATCACGACGACG ACGACGTTTTAGAGAATGGTGCCACTCCTGAATGGGCCTTGCTTCTTATTGGTTGCCTTCTCGGTCTCGCCTCCGGTCTCTGTGTCGCCGCTTTCAATAA AGGGGTTCATTTAATACATGAATGGGCCTGGGCTGGGACTCCAAACGAGGGTGCTGCATGGCTCCGTCTGCAAAGGCTGTCAGACACTTGGCATAGGATT CTTTTAATCCCTGTCGCTGGAGGAGTTATTGTTGGAATGATGCATGGCTTGGTTGAAATATTGGAGCAAATAAGGCAGAACCTTTCTTCTCACAGAAAAG GTTTTGATTTGGTCGCAGGAGTGTTTCCTACAGTGAAAGCCATTCAGGCAGCTGTTACTTTAGGTACTGGTTGTTCTTTGGGTCCTGAAGGACCTAGTGT AGACATCGGCAAATCATGTGCCCATGGATTCTCTTTAATGATGGCAAACAATAGAGAAAGGATGAATACTCTTATTGCAGCTGGCGCAGCTGCTGGGATT TCTTCAGGTTTCAATGCACCTGTTGCTGGTTGTTTCTTTGCTATTGAAACTGTGTTGAGGCCTCTCCATGCTGAAAATTCACCTCCATTTACAACTGCAA TGATTCTGTTGGCTTCTGTAATATCATCAACTGTATCAAACACGTTACTTGGAACACAATCAGCTTTTACAGTGCCATCGTATGATTTGAAATCTGCTGC TGAATTACCCTTATACCTGATTTTGGGCATGCTATGTGGTGTTGTAAGTGTGGCCTTCACTCGCTTGGTCACTTGGTTCACCAAGTCATTTGAGTTTATC AAAGAAAAATTTGGCCTTCATCCTGTTGCATGCCCTGCTTTAGGTGGTTTAGGAGCTGGAATAATTGCTCTGAAGTATCCTGGAATACTATATTGGGGTT TCACCAATGTTGAAGAAATCTTACACACTGGAAAGAGTGCTTCTGCTCCTGGAATCTGGTTATTAACCCAACTAGCAGCAGCCAAAGTTGTGGCCACTGC TCTGTGTAAGGGTTCGTTGCTTGTAGGTGGCCTTTATGCACCAAGTTTGATGATTGGTGCAGCTGTTGGTGCTGTATTTGGAGGTTCAGCTGCGGAACTT ATCAATTCAGCCATTCCAGGAAATGCTGCCGTTGCCCAGCCACAGGCATATGCATTGGTTGGAATGGCTGCTACATTAGCGTCAGTTTGTTCAGTGCCCT TGACATCAATTCTACTTCTCTTTGAGTTGACAAAAGATTACAGGATAATCCTTCCCCTCATGGGAGCTGTTGGGTTAGCGATATGGGTCCCATCTGTGGC TGACCATGGCAAGGAGAATGAAAAACCTGGTGCTCATAGTTTGGCTAGAGGTTATTCTTCTCTTTCAAACGATACTGATGATGAAGCAATCAATGAAGAT TTGCTTGCAGAAAATCTCAAGGTTTCTAAGGCCATGTCAAAGAACTATGCAAAGGTTTCATTAAGCTTAACATTGAAAGAAGCTATAAAATATATGCATG ACTGCAAACAGAATTGCTTGCTCGTAGTTGATGATGAAGATTTACTGGAAGGAATACTAACATATGGCGACATCAGACGGCTGTCCAAGACATCTAGCGA TGCTTCCACGGGTGATTCAACAATCATAGATGTAAATACCTGTCTTGTTTCTACTGTTTGCACCCGGGAGATAAGGTACCGAGGTCAAGTTCGTGGACTT TTGACATGTTATCCTGACACTGATTTGGCAATTGCCAAGGATTTGATGGAGGCCAAAGGCATCAAGCAGTTGCCTGTGGTTAAGCGTAGTGGAGGCTCTC AAAAAGATTGGAAACGAAGGGTTGTTGCTATCCTTCATTATGACTCAATCTGGAATTGCCTCAGAGAGGAGATAGCTCGGAGGGGACGAGTCCATCAGAA CAGAAAAGAGGATGATATTGAGATGATTGAAAACGGGCATTAA
AA sequence Show only first row Show all	>Potri.001G472700.1 pacid=42793634 polypeptide=Potri.001G472700.1.p locus=Potri.001G472700 ID=Potri.001G472700.1.v4.1 annot-version=v4.1 MLRETMEDGDQKHLLLKSNSSITQQHDDHDQQPLVLVVDNNDLEAGGAGGAGGGGFNRSSSDNSRGGHKKTAAIKDLIRGFSGRRPSSSLNNNNLHYNHL DDEDDDTPSISDHDHRKNRNYDHRVKNINDHDDDDVLENGATPEWALLLIGCLLGLASGLCVAAFNKGVHLIHEWAWAGTPNEGAAWLRLQRLSDTWHRI LLIPVAGGVIVGMMHGLVEILEQIRQNLSSHRKGFDLVAGVFPTVKAIQAAVTLGTGCSLGPEGPSVDIGKSCAHGFSLMMANNRERMNTLIAAGAAAGI SSGFNAPVAGCFFAIETVLRPLHAENSPPFTTAMILLASVISSTVSNTLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVAFTRLVTWFTKSFEFI KEKFGLHPVACPALGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVATALCKGSLLVGGLYAPSLMIGAAVGAVFGGSAAEL INSAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSILLLFELTKDYRIILPLMGAVGLAIWVPSVADHGKENEKPGAHSLARGYSSLSNDTDDEAINED LLAENLKVSKAMSKNYAKVSLSLTLKEAIKYMHDCKQNCLLVVDDEDLLEGILTYGDIRRLSKTSSDASTGDSTIIDVNTCLVSTVCTREIRYRGQVRGL LTCYPDTDLAIAKDLMEAKGIKQLPVVKRSGGSQKDWKRRVVAILHYDSIWNCLREEIARRGRVHQNRKEDDIEMIENGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Potri.001G472700 [exp]	0	1
AT1G54920			unknown protein		Potri.005G034100 [exp]	1.00	0.8534
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Potri.006G152700 [exp]	6.16	0.7911
AT1G53190			RING/U-box superfamily protein...		Potri.001G373700 [exp]	8.48	0.6613
AT1G57560	MYB	ATMYB50	myb domain protein 50 (.1)		Potri.010G004300 [exp]	9.79	0.7549
AT5G47490			RGPR-related (.1)		Potri.001G157800 [exp]	12.24	0.7117
AT2G42880		ATMPK20	MAP kinase 20 (.1)		Potri.002G059900 [exp]	15.23	0.7391	Pt-ATMPK20.2
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Potri.018G068700 [exp]	15.29	0.7805
AT5G51670			Protein of unknown function (D...		Potri.012G129900 [exp]	17.34	0.7438
AT3G53260		PAL2, ATPAL2	phenylalanine ammonia-lyase 2 ...		Potri.010G224100 [exp]	18.00	0.7510	PAL.3
AT3G62660		GATL7	galacturonosyltransferase-like...		Potri.002G200200 [exp]	22.71	0.7253

Compare expression of checked genes

Potri.001G472700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.