Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	WRKY2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56270 584 / 0 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT4G26440 392 / 7e-128 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT4G26640 293 / 5e-90 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 256 / 8e-77 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G03340 253 / 2e-75 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 239 / 7e-71 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G37260 199 / 2e-57 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G04880 196 / 7e-55 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT5G07100 149 / 4e-41 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT4G30935 156 / 7e-41 WRKY ATWRKY32, WRKY32 WRKY DNA-binding protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G169300 [exp] 1277 / 0 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G086000 [exp] 381 / 1e-121 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G361600 [exp] 311 / 7e-97 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.019G053900 [exp] 303 / 1e-94 AT5G56270 154 / 5e-40 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.019G123500 [exp] 288 / 8e-88 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.004G120800 [exp] 283 / 2e-86 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.010G163000 [exp] 277 / 7e-85 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.006G105300 [exp] 270 / 2e-81 AT2G38470 341 / 4e-111 WRKY DNA-binding protein 33 (.1) Potri.008G091900 [exp] 268 / 2e-81 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032887 [exp] 855 / 0 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10027139 [exp] 848 / 0 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10026838 [exp] 350 / 7e-110 AT5G56270 298 / 7e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10003769 [exp] 324 / 2e-101 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10016595 [exp] 323 / 2e-101 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10020215 [exp] 291 / 2e-89 AT5G56270 276 / 3e-84 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10043167 [exp] 282 / 2e-86 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10001265 [exp] 278 / 7e-85 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10012215 [exp] 275 / 2e-83 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10037131 [exp] 268 / 6e-82 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G472800.9 pacid=42790448 polypeptide=Potri.001G472800.9.p locus=Potri.001G472800 ID=Potri.001G472800.9.v4.1 annot-version=v4.1 ATGGCTGGGATTGATGATAATGTTGCTATAATTGGTGACTGGGTACCTCCTAGTCCAAGCCCAAGAGCATTTTTCTCAGTAATGTTAGGTGACGATATTA ACTCAAGTACAATCACAGAACCCCCTGGGGAGAATAGAACTAAAGGGCTCTTTCTGGGACAACCAGAGCAGATGACAACAGGAAATGCCGAAAAAAAAGA TGGAGCACGAACTAGTGGTGCCCAGTTGACTGAATTGGGTTCATTTTCTGAGCAAAAATCAAACTCACGTGGAGGTCTCGTTGAAAGAATGGCAGCCAGA GCTGGATTTAATGCTCCAAGGTTGAATACAGAAAGTATCAGGTCTGCTGAAACTTCACTGAACCCTGAGATTAGGTCTCCTTATTTGACAATACCACCTG GTCTCAGCCCGACAACCTTGCTGGAATCTCCAGTTTTCCTTTCAAACTTGGCTCAGCCATCTCCAACTACTGGAAAGTTTTCATTTTTTCCAAATGGTAG CAGTAAGAACTCCACAGCGGGCTCCAAACTTCCTGACAATAGTAAAGAAACTTTCTTCGAAGACATCAATTCATCTTCGTTCGCATTCAAGCCTATGGGA GAATCGGGCTCTTCATTTTTCCTTGGTGGAACAAGCAAGATAACTTCAGCCACTTTTCTACAGCAATCCTTTCCCAGTATGGATGTTTCTGTTCACTCTG AAAATGCTCTTCAGTCACATGATGTTGCACCCGCCAAAGTTCAGTCTGAGAGTAGAAACTCCCTTCATTTTCCAGCAGAATTCTTCAAATTGACAACTGA AAAGGATAATGGAGGAAATACCGTAGCAGATCAGAGGACTTTTGATACTGTTGGTGGCAATGCTGAGCATTCTTCTCCTCTTGATGAGCAACAAGATGAA GAAGGAGATCAAAGAGCCAGTGGAGATTCAATGGCTGCTGGTGGCACGCCATCTGACAAGGGATATAATTTTAGAAAATATGGACAAAAACAAGTAAAAG GAAGTGAATATCCACGGAGTTATTACAAGTGCACTCATCCAAATTGCTCAGTTAAGAAGAAAGTGGAACGTTCTCTCGAGGGCCATATAACAGAGATCAT ATACAAGGGGGCACACAGCCATCCCAAGCCGCTACCCAACCGGAGGTCAGCTGTTGGATCACTGGATACACAACTGGACATTCCTGAACAAGTTGTTCCA CAGATTGGTTCTGTTAATGATTCGGCTTGGGCAGGTACACAAAAGGGAATTGCTGCAGGGACTTCTGATTGGAGGCGTGACAATGTCGAGGTTACATCTT CAGCATCTGGGGGCCCAGGCCCTGAATTTGGGAATCCATCCTCCTCGGTACAGGCTCAGAGTGGAACTCCCTTTGAGTCAGCTGATGCCATTGATGCCTC ATCTACCTTTTCAAATGATGAAGATGATGATCGGGCTACACATGGCAGTGTAGGTTACGATGGTGAAGGAGAAGAATCTGAGTCGAAGAGAAGGAAAATT GAAACATATGCAACTGAAATGAGTGGAGCCACCAGAGCTATTCGTGAGCCTAGAGTTGTGGTCCAGACAACCAGTGAGGTGGATATCCTTGATGATGGAT ATCGCTGGCGAAAGTATGGGCAGAAAGTTGTGAAAGGAAATCCAAATCCTAGGAGTTATTACAAGTGTACTAGTGCAGGCTGCACGGTTAGAAAGCATGT GGAGAGGGCATCACATGATCTCAAGTCAGTGATCACTACGTATGAGGGGAAGCACAATCATGATGTTCCTGCTGCTCGCAATAGCAGCCATGTGAACTCT GGCACCTCCAATGCCACCCCAGGCCAAGCTGCTGTTGCTGTTCAAACCCATGTTCACAGACATGAGTCATCACAGGTTCACAACAGCATGGCTAGGTTTG AGCGGCCTCCTGCATTTGGATCCTTCAGCCTGCCTGGAAGGCAGCAGCTGGGGCCTTCGCCTGGCTTCTCATTTGGAATGAATCAACCTGGCTTGGCCAA TCTTGCAATGGCTGGCTTAGGTCAGGGCCAACCAAAGATGCCTGTTATGCCCATTCATCCATACTTGGCGCAGCAACATCCTGGGAACGAAATGGGGTTC ATGATGCCGAAAGAAGAACCAAAGGTGGGGCCTGTGACAGAACCTAGTCTGAACCTCTCCAACAATCGAACACTGTATCAGCAAATCATGAGTAGGCTGC CTCTTGGGCCTCAGATGTAA
AA sequence Show only first row Show all	>Potri.001G472800.9 pacid=42790448 polypeptide=Potri.001G472800.9.p locus=Potri.001G472800 ID=Potri.001G472800.9.v4.1 annot-version=v4.1 MAGIDDNVAIIGDWVPPSPSPRAFFSVMLGDDINSSTITEPPGENRTKGLFLGQPEQMTTGNAEKKDGARTSGAQLTELGSFSEQKSNSRGGLVERMAAR AGFNAPRLNTESIRSAETSLNPEIRSPYLTIPPGLSPTTLLESPVFLSNLAQPSPTTGKFSFFPNGSSKNSTAGSKLPDNSKETFFEDINSSSFAFKPMG ESGSSFFLGGTSKITSATFLQQSFPSMDVSVHSENALQSHDVAPAKVQSESRNSLHFPAEFFKLTTEKDNGGNTVADQRTFDTVGGNAEHSSPLDEQQDE EGDQRASGDSMAAGGTPSDKGYNFRKYGQKQVKGSEYPRSYYKCTHPNCSVKKKVERSLEGHITEIIYKGAHSHPKPLPNRRSAVGSLDTQLDIPEQVVP QIGSVNDSAWAGTQKGIAAGTSDWRRDNVEVTSSASGGPGPEFGNPSSSVQAQSGTPFESADAIDASSTFSNDEDDDRATHGSVGYDGEGEESESKRRKI ETYATEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHVNS GTSNATPGQAAVAVQTHVHRHESSQVHNSMARFERPPAFGSFSLPGRQQLGPSPGFSFGMNQPGLANLAMAGLGQGQPKMPVMPIHPYLAQQHPGNEMGF MMPKEEPKVGPVTEPSLNLSNNRTLYQQIMSRLPLGPQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G472800 [exp]	0	1	WRKY2.2
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.011G146700 [exp]	3.74	0.9005
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Potri.002G253200 [exp]	4.89	0.8634
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Potri.004G081100 [exp]	5.91	0.9013
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.002G019400 [exp]	6.00	0.8680
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.015G026100 [exp]	7.48	0.8533
AT1G49160		WNK7	Protein kinase superfamily pro...		Potri.005G057300 [exp]	10.39	0.8472
AT3G51390			DHHC-type zinc finger family p...		Potri.007G060100 [exp]	10.95	0.8629
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.004G058100 [exp]	11.48	0.8629
AT5G48520		AtAUG3	augmin 3, unknown protein		Potri.014G191100 [exp]	17.54	0.8592
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.011G153700 [exp]	18.43	0.8482	Pt-MOR1.1

Compare expression of checked genes

Potri.001G472800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.