Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55610 1485 / 0 BRL1 BRI1 like (.1.2) AT3G13380 1465 / 0 BRL3 BRI1-like 3 (.1) AT4G39400 979 / 0 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT2G01950 904 / 0 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT5G07280 542 / 3e-172 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G02220 469 / 7e-147 ATPSKR1 phytosulfokin receptor 1 (.1) AT1G74360 471 / 1e-146 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 469 / 9e-146 Leucine-rich receptor-like protein kinase family protein (.1) AT5G53890 464 / 1e-144 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT5G63930 464 / 7e-144 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G169600 [exp] 2128 / 0 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.007G078100 [exp] 942 / 0 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G140500 [exp] 929 / 0 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.005G086500 [exp] 929 / 0 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.010G101100 [exp] 927 / 0 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.012G139000 [exp] 534 / 4e-168 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G141200 [exp] 523 / 2e-164 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G398500 [exp] 486 / 9e-153 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.011G116900 [exp] 475 / 1e-148 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033533 [exp] 981 / 0 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 968 / 0 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 963 / 0 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 946 / 0 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 898 / 0 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10039132 [exp] 897 / 0 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10014996 [exp] 526 / 2e-165 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038875 [exp] 518 / 2e-162 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10009213 [exp] 476 / 5e-149 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10005403 [exp] 470 / 1e-146 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G472900.2 pacid=42787717 polypeptide=Potri.001G472900.2.p locus=Potri.001G472900 ID=Potri.001G472900.2.v4.1 annot-version=v4.1 ATGAAGAAACAATGGAGGATATCATCACAAAGGCCACCACACAAAGCCATGATTAGAATCTTTGGTTATGTGTTGCTGTTGCTGTTGTTATTTATGCCAT CATCATCACAAACCAGAGAGTTGTCATCGCAGCAAAGTACCAATAATGAAGTTGTGGGATTATTAGCCTTCAAGAAATCCTCTGTTCAATCTGATCCAAA TAATTTATTAGCCAACTGGTCTCCGAATTCTGCTACTCCATGTTCATGGTCAGGCATCTCTTGCTCTCTTGATTCCCATGTCACCACTCTCAACCTCACC AACGGTGGTCTCATTGGAACCCTAAACCTCTATAACCTAACTGGGGCCTTGCCATCTCTCAAACATCTTTATTTGCAAGGCAATTCTTTCTCTGCTTCTG ATCTTTCTGCTTCCTCTTCTTGTGTTCTTGAGAGTCTTGACTTGTCTTCAAACAACATCTCGGACCCTCTTCCAAGAAAGTCCTTTTTTGAGTCTTGCAA TCACCTCTCTTATGTTAATCTCTCTCATAATTCCATTCCTGGTGGTTCCCTTCGATTTAGTCCTTCCTTGCTACAGCTTGACCTCTCTCGCAATACTATT TCTGATTCTACCTGGCTGGCCTACTCTCTTTCCACCTGCCAGAACTTGAATCTTCTTAACTTCTCCGATAACAAGCTTGCTGGAAAACTTGCGGTAACTC CCTTGTCCTGCAACAGTCTATCGGTTTTAGACCTCTCATACAATCTATTATCTGGGGAGATACCACCTAATTTTGTTGCAGACTCTCCATCTCTCAAATA TTTGGATCTCTCACACAACAACTTCTCTGCCAACTTCTCCAGCCTTGATTTTGGGCACTATTGCAATCTTACTTGGCTCAGTTTGTCACAAAATAGGCTC TCCGGCATTGGATTTCCATTAAGTTTGAGGAACTGTGTGCTTCTACAGACGCTTAACCTCTCCCGTAACGAGCTACAATTAAAGATTCCTGGTAACTTTT TGGGGAGTTTCACGAATCTAAGGCAGTTGTCTCTGGCTCACAATCTGTTTTATGGTGACATTCCTCTTGAGTTGGGACAGACCTGTGGAACTCTACAGGA ATTGGATCTATCAGCAAACAAACTCACTGGTGGCTTGCCGCTGACTTTTGCATCGTGTTCTTCTATGCAGAGTCTGAATCTTGGCAACAATCTACTCTCC GGGGATTTCCTCACTACTGTTGTAAGCAATCTTCAAAGTCTGATATATCTGTATGTTCCATTCAACAACATTACTGGTACCGTGCCTCTGTCTCTCGCAA ATTGTACTCATCTTCAAGTGCTTGACCTCAGTTCTAATGGCTTCACGGGGGATGTTCCTTCTAAGTTGTGTTCCTCCTCGAACCCAACCGCACTCCAAAA GTTACTCCTAGCTGATAATTACCTATCAGGAAAAGTTCCATCAGAGCTTGGAAGCTGCAAAAACCTGAGGAGCATTGATCTTAGTTTCAACAGCTTGAAT GGACCAATTCCCTTGGAGGTTTGGACCTTGCCAAATCTTTTGGACTTGGTTATGTGGGCAAACAATCTCACTGGTGAGATCCCGGAAGGCATTTGTGTTA ATGGAGGAAACCTCGAGACTTTGATTCTCAATAACAATCTCATCACAGGAAGCATTCCTCAGTCCATTGGCAATTGCACTAATATGATTTGGGTTTCCCT TTCCAGCAACCGGCTTACTGGAGAAATTCCTGCTGGCGTTGGAAATCTAGTTAATCTGGCTGTTCTCCAAATGGGTAACAATTCACTTACCGGGAAAATA CCACCAGAGATTGGCAATTGTCGGAGCCTCATTTGGCTTGATTTGAACAGCAACAACCTAAGTGGTCCTCTTCCACCCGAGCTTGCAGACCAAGCTGGTC TAGTTGTTCCTGGAATTGTATCCGGGAAGCAGTTTGCATTTGTAAGAAATGAGGGTGGGACATCATGCCGAGGAGCTGGGGGACTGGTTGAATTTCAGGG GATCCGGGCAGAAAGGTTGGAAAATCTTCCTATGGTTCACTCTTGTCCAACAACAAGAATTTATTCTGGCATGACAGTTTATACATTCGTCACAAATGGC AGCATGATATTCCTTGATCTTGCCTACAATTCGTTGTCAGGAACTATCCCTCAAAATTTTGGTTCGATGAGCTATTTGCAGGTCTTGAACTTGGGGCACA ATAAGCTAACCGGAAATATTCCTGATAGTTTTGGAGGTTTGAAAGCAATTGGAGTTCTGGATCTCTCACACAATGATCTCCAAGGATTTCTACCAGGGTC TTTAGGGACTCTCTCATTTCTTAGTGATCTTGATGTGTCGAACAACAACCTCACTGGTCCTATCCCTTCTGGAGGACAGCTAACTACTTTCCCCCAATCC AGGTATGAAAACAATTCTGGCCTCTGCGGTGTACCATTGCCCCCTTGTAGCTCTGGAGGTCACCCCCAAAGTTTTACCACTGGGGGAAAGAAGCAATCTG TGGAAGTAGGGGTGGTCATTGGCATCACATTTTTTGTCTTATGCCTCTTTGGTCTTACATTGGCTCTTTATCGAGTAAAGAGGTACCAGCGGAAGGAAGA ACAGAGGGAGAAGTACATCGACAGCCTCCCAACTTCAGGTAGCAGCAGCTGGAAACTTTCAGGTGTTCCTGAGCCTTTGAGCATCAACATTGCCACTTTC GAGAAACCTCTAAGAAAGTTGACTTTTGCCCATCTACTTGAAGCTACGAATGGTTTCAGTGCTGATAGCTTAATAGGGTCTGGTGGATTTGGAGAGGTAT ACAAGGCACAACTAAAAGATGGATGTGTTGTTGCTATAAAGAAGCTGATTCATGTCACAGGTCAGGGGGACAGAGAGTTTATGGCAGAAATGGAAACTAT TGGGAAGATCAAGCACCGCAACCTGGTTCCTTTGCTGGGTTACTGCAAAATTGGAGAGGAGAGGCTTCTTGTGTATGAATACATGAAATGGGGGAGTTTA GAGTCTGTTCTTCATGACAGGTCCAAAGGAGGATGCTCAAGGCTTGATTGGGCAGCAAGAAAGAAGATTGCAATAGGCTCAGCAAGAGGACTTGCTTTCC TACATCACAGCTGCATACCTCACATTATCCACCGTGACATGAAGTCTAGCAATGTTCTTTTAGATGAAAACTTTGAAGCTCGGGTTTCGGATTTTGGAAT GGCAAGATTGGTGAACGCCCTTGACACACATCTTAGCGTGAGTACACTTGCAGGAACTCCAGGTTATGTGCCCCCTGAGTATTATCAGAGCTTTAGATGC ACATCGAAAGGGGATGTCTACAGCTATGGTGTCATACTTCTGGAGCTCCTCTCAGGCAAGAAGCCAATAGATTCCGCTGAGTTTGGTGATGATAACAACC TTGTTGGATGGGCAAAGCAGCTATATAGAGAGAAGAGAAGCAATGGGATACTGGACCCTGAGTTAATGACACAAAAATCTGGAGAAGCTGAATTATACCA GTATTTGAGAATCGCATTCGAGTGCCTTGATGACAGGCCTTTCAGACGGCCGACCATGATACAGGTTATGGCTATGTTCAAAGAGCTTCAGGTTGACTCT GAAAGCGATATCCTAGATGGTTTCTCTTTGAAAGATGCAAGCATTGATGAATTAAGGGAGAAAGAGTCTAGCTAA
AA sequence Show only first row Show all	>Potri.001G472900.2 pacid=42787717 polypeptide=Potri.001G472900.2.p locus=Potri.001G472900 ID=Potri.001G472900.2.v4.1 annot-version=v4.1 MKKQWRISSQRPPHKAMIRIFGYVLLLLLLFMPSSSQTRELSSQQSTNNEVVGLLAFKKSSVQSDPNNLLANWSPNSATPCSWSGISCSLDSHVTTLNLT NGGLIGTLNLYNLTGALPSLKHLYLQGNSFSASDLSASSSCVLESLDLSSNNISDPLPRKSFFESCNHLSYVNLSHNSIPGGSLRFSPSLLQLDLSRNTI SDSTWLAYSLSTCQNLNLLNFSDNKLAGKLAVTPLSCNSLSVLDLSYNLLSGEIPPNFVADSPSLKYLDLSHNNFSANFSSLDFGHYCNLTWLSLSQNRL SGIGFPLSLRNCVLLQTLNLSRNELQLKIPGNFLGSFTNLRQLSLAHNLFYGDIPLELGQTCGTLQELDLSANKLTGGLPLTFASCSSMQSLNLGNNLLS GDFLTTVVSNLQSLIYLYVPFNNITGTVPLSLANCTHLQVLDLSSNGFTGDVPSKLCSSSNPTALQKLLLADNYLSGKVPSELGSCKNLRSIDLSFNSLN GPIPLEVWTLPNLLDLVMWANNLTGEIPEGICVNGGNLETLILNNNLITGSIPQSIGNCTNMIWVSLSSNRLTGEIPAGVGNLVNLAVLQMGNNSLTGKI PPEIGNCRSLIWLDLNSNNLSGPLPPELADQAGLVVPGIVSGKQFAFVRNEGGTSCRGAGGLVEFQGIRAERLENLPMVHSCPTTRIYSGMTVYTFVTNG SMIFLDLAYNSLSGTIPQNFGSMSYLQVLNLGHNKLTGNIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGTLSFLSDLDVSNNNLTGPIPSGGQLTTFPQS RYENNSGLCGVPLPPCSSGGHPQSFTTGGKKQSVEVGVVIGITFFVLCLFGLTLALYRVKRYQRKEEQREKYIDSLPTSGSSSWKLSGVPEPLSINIATF EKPLRKLTFAHLLEATNGFSADSLIGSGGFGEVYKAQLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKWGSL ESVLHDRSKGGCSRLDWAARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLVNALDTHLSVSTLAGTPGYVPPEYYQSFRC TSKGDVYSYGVILLELLSGKKPIDSAEFGDDNNLVGWAKQLYREKRSNGILDPELMTQKSGEAELYQYLRIAFECLDDRPFRRPTMIQVMAMFKELQVDS ESDILDGFSLKDASIDELREKESS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.001G472900 [exp]	0	1
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Potri.006G270500 [exp]	2.44	0.8045
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.015G020200 [exp]	2.82	0.8030
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.011G169600 [exp]	4.47	0.7790
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.008G144700 [exp]	6.92	0.8245	Pt-PSKR.2
AT4G23440			Disease resistance protein (TI...		Potri.003G129600 [exp]	8.00	0.7508
AT1G22500		AtATL15	Arabidopsis thaliana Arabidops...		Potri.005G160900 [exp]	10.00	0.8169
AT4G15890			binding (.1)		Potri.010G013300 [exp]	11.48	0.7490
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.008G009100 [exp]	24.85	0.6930
AT3G01516			unknown protein		Potri.001G349700 [exp]	30.06	0.6874
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128200 [exp]	34.29	0.7033	Pt-APP.2

Compare expression of checked genes

Potri.001G472900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.