Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PEX5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56290 978 / 0 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT3G04240 61 / 2e-09 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G48150 59 / 8e-09 CDC23, APC8 anaphase-promoting complex subunit 8 (.1) AT3G11540 58 / 2e-08 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G16320 54 / 4e-07 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05150 50 / 8e-06 Calcium-binding tetratricopeptide family protein (.1) AT2G32450 50 / 8e-06 Calcium-binding tetratricopeptide family protein (.1) AT1G80410 49 / 2e-05 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT1G78770 47 / 6e-05 APC6 anaphase promoting complex 6 (.1) AT2G20000 44 / 0.0006 CDC27b, HBT HOBBIT, CDC27 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G170000 [exp] 1280 / 0 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.012G075000 [exp] 59 / 1e-08 AT3G48150 957 / 0.0 anaphase-promoting complex subunit 8 (.1) Potri.006G208900 [exp] 58 / 2e-08 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 58 / 2e-08 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G051400 [exp] 54 / 5e-07 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025600 [exp] 53 / 9e-07 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G389300 [exp] 52 / 2e-06 AT1G78770 911 / 0.0 anaphase promoting complex 6 (.1) Potri.011G108800 [exp] 50 / 5e-06 AT1G78770 907 / 0.0 anaphase promoting complex 6 (.1) Potri.005G234900 [exp] 49 / 2e-05 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027124 [exp] 988 / 0 AT5G56290 1003 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Lus10032883 [exp] 704 / 0 AT5G56290 758 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Lus10021336 [exp] 58 / 3e-08 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 57 / 4e-08 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003576 [exp] 57 / 7e-08 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042152 [exp] 55 / 2e-07 AT3G48150 904 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10004242 [exp] 55 / 3e-07 AT3G48150 895 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10004779 [exp] 55 / 3e-07 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 55 / 3e-07 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032234 [exp] 51 / 3e-06 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13371 [poplar] [flax] TPR_9 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.001G473100.2 pacid=42788135 polypeptide=Potri.001G473100.2.p locus=Potri.001G473100 ID=Potri.001G473100.2.v4.1 annot-version=v4.1 ATGGCGATGCGAGAGCTTGTAACAGGAGCAGCAGCCTGTGCTGTTCCAGGTTCTTCCTCTTCATCATCTAATCCTCTCGGTGCTCTCGCCAATGCTCTTA TCGGTTCCTCTTCCAAGCCTCTGGAAGGGCTGAAGGAAATTCCAACCTCTACAACCACAGCTACAGAGCCTCCGTTGTACCAGGATGCCACTGCTGAGGA CCGCTTGAGAGGACTCCCTGGAGCTGACTTTGATCACTCCTTTTCTCAGCATCCTACTTCTCAGGGTTCAGAATTTCTTCGTCGCTTTCGCACTTCTGAT CAGAATGGATTTGCCAATGCTTGGGATGAGATTCAGCGCTCTGGTCCTCCTCCTCCTCCTGCTCTATTGGATCACGGCCTACCTCCTCCTCAGCTTCAAC CAACTTTGGACGGACCACCCCAAAGAGTGTTGTCAAACTTTTTGCACTCCTTTGTGGGCAGTAGCCATGGTGGAATTCCATTTCGTCCTGCTCCACTACC TGCATTAGGATTGTCTGAAGGTGACAAACAATGCATACGTGACCGTAGCAGCATTATGGCCCGGCATTTTTTTGCTGACAAGAGTGAAGATTTTATCAAT ACACAGGTGAATGCACTTTTGTCTTCGTTAGATATTGATGGTGATGTGCGGGTTAAGGGACCTTTACCCGGTAGGTTCCAAGAGCTAGAGGATTACTGGA ACGAGTCTCAAGCTGCTCGGAGACCTGGTCCTCCTCAAGCTGATGGATGGGTTACTGAATTTAGCCAACACAGAATAGACCATGGTGATCCTAATGTTTG GGCTCACTCATTTGAACAGCAGCATGGTGCTAATGGTTGGGCCTCTGAGTTTGAGCAGGAACAGTTGATCTCAGCAGCAGATCAAATGGGAGGTGCAAAT ATCTCAAACTTATCTACAATGGAACAGACTCGAATGCTTGCACACACACTAGCTCAGAACAATGACCCCAAATTTCAGAATTCTAAGTTTCTTCAATTCG TCTCAAAGATGAGTCGCGGTGAACTTATTATTGATGACAATCAAGTCAAGCCAGCTGCGTTGTCTTCACCAGGGGATTGGGCAACGGAATATCAGCAAAA ATATTCTGGGGGTCGTTGGGCTGATGAATATGCACGTGACCAGCTTTCTCATGGACCTGATCAATGGGCGAATGAGTTTGCTGCTGAAAGAGAGCAAAGT CGGCCTGTTGATGATAAGTGGGTAAATGAATTTTCAAAGTTGCATGTTGATGACTGGGCAGATGAATTTGGACGACAGGTTGGAGAAGGGGCTTTTGGGG AGATTTCAACTGATAATTGGGCAGATACTTATGATGAGTACCTAAGTGAGCAAGTAGTTGCCAAGCAGAAGCCAGATGCTTCAAGGGGCGTCTATGTGTT TACAGACATGAATCCTTATGTCGGTCACCCGAATCCTTTGAAAGAAGGCCAGGACCTATTCCGCAAGGGGCTTTTGAGTGAAGCTGTGCTTGCTTTAGAG GCTGAAGTTTTGAAAAACCCAGATAACGCTGAAGGTTGGAGGTTGCTTGGAATAGCACATGCAGAGAATGATGATGATCAACAGGCGATTGCAGCCATGA TGCGCGCGCATGAAGCTGATCCTACAAATCTTGAAGTGCTTCTTGCTCTTGGTGTGAGCCATACAAATGAGTTTGAGCAGGCAGCTGCATTGAAATATTT ATATGGATGGCTACAACATCATCAAAAGTACAGAACACTAGCCACTCCAGAGCTTTCTGATTCTTTGTATTATGCTAATGTTGCTAGATTATTCAATGAA GCTGCTCAGATGGCACCTGAGGATGCTGATGTGCACATAGTACTTGGTGTCCTGTACAATCTGTCCCGGGAATATGACAAAGCCATTGCTTTTTTCCAGA CAGCTTTGAAACTCAAGCCTCAGGATTACTCTCTTTGGAACAAGCTTGGTGCAACACAAGCCAATAGTGTTCAGAGTGCTGATGCAATATTGGCATATCA GCAGGCACTTGATCTGAAGCCTAACTATGTTCGAGCATGGGCAAACATGGGAATCAGTTATGCCAACCAGGGTATGTATGAGGATTCCATCCGATACTAT GTTCGGGCACTTGCTATGAATCCCAAGGCAGATAATGCTTGGCAATATTTGAGGATTTCTTTAAGTTTTGCTTCTAGGAACGACATGTTGGAAGCTTGTG ATTCTCGAAATCTTGATGCTCTACAGAAGGAGTTCCCACTATAA
AA sequence Show only first row Show all	>Potri.001G473100.2 pacid=42788135 polypeptide=Potri.001G473100.2.p locus=Potri.001G473100 ID=Potri.001G473100.2.v4.1 annot-version=v4.1 MAMRELVTGAAACAVPGSSSSSSNPLGALANALIGSSSKPLEGLKEIPTSTTTATEPPLYQDATAEDRLRGLPGADFDHSFSQHPTSQGSEFLRRFRTSD QNGFANAWDEIQRSGPPPPPALLDHGLPPPQLQPTLDGPPQRVLSNFLHSFVGSSHGGIPFRPAPLPALGLSEGDKQCIRDRSSIMARHFFADKSEDFIN TQVNALLSSLDIDGDVRVKGPLPGRFQELEDYWNESQAARRPGPPQADGWVTEFSQHRIDHGDPNVWAHSFEQQHGANGWASEFEQEQLISAADQMGGAN ISNLSTMEQTRMLAHTLAQNNDPKFQNSKFLQFVSKMSRGELIIDDNQVKPAALSSPGDWATEYQQKYSGGRWADEYARDQLSHGPDQWANEFAAEREQS RPVDDKWVNEFSKLHVDDWADEFGRQVGEGAFGEISTDNWADTYDEYLSEQVVAKQKPDASRGVYVFTDMNPYVGHPNPLKEGQDLFRKGLLSEAVLALE AEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEADPTNLEVLLALGVSHTNEFEQAAALKYLYGWLQHHQKYRTLATPELSDSLYYANVARLFNE AAQMAPEDADVHIVLGVLYNLSREYDKAIAFFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMYEDSIRYY VRALAMNPKADNAWQYLRISLSFASRNDMLEACDSRNLDALQKEFPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Potri.001G473100 [exp]	0	1	PEX5.2
AT1G35660			unknown protein		Potri.019G083100 [exp]	1.41	0.9187
AT5G47430			DWNN domain, a CCHC-type zinc ...		Potri.013G112200 [exp]	1.41	0.8983
AT1G17780			unknown protein		Potri.001G376800 [exp]	3.74	0.8801
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.013G092000 [exp]	6.70	0.8833
					Potri.002G154150 [exp]	8.48	0.8826
AT1G66510			AAR2 protein family (.1.2.3)		Potri.017G123900 [exp]	10.09	0.8848
AT2G31740			S-adenosyl-L-methionine-depend...		Potri.001G317700 [exp]	10.81	0.8475
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Potri.006G262700 [exp]	11.83	0.8837
AT1G15890			Disease resistance protein (CC...		Potri.011G124240 [exp]	12.24	0.8088
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	16.61	0.8378

Compare expression of checked genes

Potri.001G473100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.