Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16220 538 / 0 Protein phosphatase 2C family protein (.1) AT1G79630 538 / 0 Protein phosphatase 2C family protein (.1.2.3) AT3G02750 452 / 1e-155 Protein phosphatase 2C family protein (.1.2.3) AT1G03590 412 / 2e-140 Protein phosphatase 2C family protein (.1) AT4G03415 410 / 2e-139 Protein phosphatase 2C family protein (.1.2) AT5G36250 400 / 1e-135 Protein phosphatase 2C family protein (.1) AT5G01700 312 / 3e-102 Protein phosphatase 2C family protein (.1.2) AT3G05640 306 / 3e-100 Protein phosphatase 2C family protein (.1.2) AT5G27930 303 / 7e-99 Protein phosphatase 2C family protein (.1.2) AT3G16800 270 / 3e-86 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G066200 [exp] 782 / 0 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G054200 [exp] 493 / 8e-172 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 479 / 2e-166 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.019G103100 [exp] 427 / 7e-146 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 421 / 2e-143 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 335 / 4e-110 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 328 / 4e-107 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.018G059800 [exp] 310 / 4e-102 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.010G006200 [exp] 310 / 1e-101 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000402 [exp] 605 / 0 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 591 / 0 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10039802 [exp] 418 / 3e-142 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10018570 [exp] 418 / 3e-142 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10022588 [exp] 415 / 4e-142 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10033708 [exp] 416 / 6e-142 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10031631 [exp] 416 / 1e-141 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1) Lus10021486 [exp] 403 / 3e-137 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10041277 [exp] 417 / 9e-134 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10037431 [exp] 412 / 3e-131 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.001G473300.3 pacid=42788361 polypeptide=Potri.001G473300.3.p locus=Potri.001G473300 ID=Potri.001G473300.3.v4.1 annot-version=v4.1 ATGGGATCTTGCTTTTCTATCATGGGGAAGAAGAAGAAAAAGGATACTGACGATGACCCACTATCCTTATCATCGTCATCAATCACTTCAACTTCTCATC TTTGGAAGAAGAGATCATCATCATCAGCTACTAATGCTAATGCTGATCCAAGTGTGCTCCTTCACATTCCTGGCAGGCTCACCACCAATGGAGCCACCAA ACTGGGTTGCTTATATACTCAGCAGGGCAAGAAAGGCACCAATCAAGACGCCATGCTCTTTTGGGAGAATTTCAGCTCAACCACAAATGATACCGTTTTT TGTGGGGTATTTGATGGTCATGGTCCTTATGGTCATTTGGTCGCCAAGAAAGTTCGCGATTCCCTTCCACTCATACTTTCTACCCACTGGAATTCTGCTC AACACAGCTGCCTTCCAAATGCTCCCCCTGCAGCAGCAGCAGCAACCACAAATTCTGATGAAGCCGTGGATGATGAATCTTTTGATTCTTTGGAGGTCGA TGAAACTGAAAAACAACTCCCAGATATGTATCTTCCACTTAAAAAGTCTTTATTGAAGGCTTTTAAATTAATGGATAAGGAGTTGAAGTTGCATCCAACA ATCGATTGTTTTTGCAGTGGGACCACTGCTGTTACTTTGATCAAGCAGGGCCAGGATCTTGTTATTGGAAATGTTGGTGACTCCAGGGCAGTTTTAGCAA CCAGAGACAAAGATGACTCCTTGCTTGCTGTTCAACTGACAGTTGACTTGAAACCTGATTTACCAAGGGAAGCTGCCAGGATCCTGCAATGTAAAGGAAG GGTCTTTGCGTTACAGGATGAGCCAGAGGTTCCACGTGTATGGTTGCCTAACAATGACTCACCTGGTCTGGCAATGGCTAGAGCTTTTGGGGACTTCTGC TTGAAGGATTTTGGTTTAATTTCCGTTCCAGATGTTTATTATCGCTGCCTCACTGAGAGGGATGAATTCATTATTCTTGCTTCAGATGGGGTTTGGGATG TCCTCTCAAATAAGGAAGCAGTTGATATTGTGGCTTCAGCCCCTGGCCGTGCAACAGCAGCCAGAGCTCTTGTAGACTGTGCTGTCCGAGCATGGAGACT TAAATATCCAACATCCAAGAATGATGATTGTGCAGTTGTATGCCTCTTTCTTGAACATCTTTGTGCAGCAAATGCAGAGGTAGAAGAGCAGGATAAGAAA AAGATTCCTAAAGAGCCTGGGGAGCATTTTGTGACCAATGAGAACGTTGGGCAGTTAGAAACACAAGATGATTCTTGTGGTCTTGTTTTTACACATTCGA GTACCACACAAAACTCTGATGAGATTGTACCTGTCTCTGAGTTGATGGTTGAAAATCCTTCTGTGAAGTGCCTGGGCCAGTCCAAGAGGAGCCTGGCAGA GTGCATTTCAACTGCAGAGGATGAGGAGTGGTCGGCCCTAGAAGGTATCACAAGGGTTAATAGTTTGCTGAGCCTTCCTAGGCTCTTGGCTGGTGACAAA AGATCAGCCAGTTGGAGAAAATGGATATGA
AA sequence Show only first row Show all	>Potri.001G473300.3 pacid=42788361 polypeptide=Potri.001G473300.3.p locus=Potri.001G473300 ID=Potri.001G473300.3.v4.1 annot-version=v4.1 MGSCFSIMGKKKKKDTDDDPLSLSSSSITSTSHLWKKRSSSSATNANADPSVLLHIPGRLTTNGATKLGCLYTQQGKKGTNQDAMLFWENFSSTTNDTVF CGVFDGHGPYGHLVAKKVRDSLPLILSTHWNSAQHSCLPNAPPAAAAATTNSDEAVDDESFDSLEVDETEKQLPDMYLPLKKSLLKAFKLMDKELKLHPT IDCFCSGTTAVTLIKQGQDLVIGNVGDSRAVLATRDKDDSLLAVQLTVDLKPDLPREAARILQCKGRVFALQDEPEVPRVWLPNNDSPGLAMARAFGDFC LKDFGLISVPDVYYRCLTERDEFIILASDGVWDVLSNKEAVDIVASAPGRATAARALVDCAVRAWRLKYPTSKNDDCAVVCLFLEHLCAANAEVEEQDKK KIPKEPGEHFVTNENVGQLETQDDSCGLVFTHSSTTQNSDEIVPVSELMVENPSVKCLGQSKRSLAECISTAEDEEWSALEGITRVNSLLSLPRLLAGDK RSASWRKWI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16220			Protein phosphatase 2C family ...		Potri.001G473300 [exp]	0	1
AT5G43670			Sec23/Sec24 protein transport ...		Potri.008G161300 [exp]	1.73	0.9146
					Potri.004G011300 [exp]	2.44	0.8841
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	5.29	0.8990
AT1G06060			LisH and RanBPM domains contai...		Potri.005G233000 [exp]	6.00	0.8483
AT2G04845			Acyl-CoA N-acyltransferases (N...		Potri.014G161800 [exp]	6.48	0.8451
AT1G01540			Protein kinase superfamily pro...		Potri.014G088800 [exp]	7.68	0.8371
AT3G21610			Acid phosphatase/vanadium-depe...		Potri.014G156000 [exp]	8.94	0.8802
AT3G54190			Transducin/WD40 repeat-like su...		Potri.006G113000 [exp]	12.24	0.8410
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Potri.006G002900 [exp]	12.40	0.8814
AT4G31860			Protein phosphatase 2C family ...		Potri.018G017800 [exp]	12.72	0.8579

Compare expression of checked genes

Potri.001G473300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.