Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79600 949 / 0 Protein kinase superfamily protein (.1) AT1G71810 374 / 5e-120 Protein kinase superfamily protein (.1) AT3G24190 372 / 4e-118 Protein kinase superfamily protein (.1) AT4G31390 356 / 4e-113 Protein kinase superfamily protein (.1.2) AT5G24970 347 / 9e-109 Protein kinase superfamily protein (.1.2) AT2G39190 254 / 1e-73 ATATH8 Protein kinase superfamily protein (.1.2) AT3G07700 228 / 9e-65 Protein kinase superfamily protein (.1.2.3) AT5G64940 227 / 3e-64 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT5G05200 130 / 1e-31 Protein kinase superfamily protein (.1) AT4G24810 121 / 6e-29 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061000 [exp] 385 / 2e-123 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.001G050700 [exp] 369 / 8e-117 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.006G275600 [exp] 356 / 4e-113 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G014000 [exp] 337 / 1e-105 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 266 / 7e-78 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G082500 [exp] 231 / 2e-65 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.005G083200 [exp] 225 / 2e-63 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 224 / 3e-63 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G061300 [exp] 125 / 4e-30 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035701 [exp] 951 / 0 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10037291 [exp] 700 / 0 AT1G79600 759 / 0.0 Protein kinase superfamily protein (.1) Lus10017924 [exp] 375 / 5e-120 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10020103 [exp] 335 / 2e-104 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020152 [exp] 328 / 4e-102 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10032616 [exp] 321 / 7e-95 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10043132 [exp] 319 / 3e-94 AT3G23940 1148 / 0.0 dehydratase family (.1.2) Lus10026952 [exp] 266 / 7e-76 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036522 [exp] 259 / 2e-75 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10006363 [exp] 239 / 1e-68 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF03109 [poplar] [flax] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Potri.002G000100.8 pacid=42779993 polypeptide=Potri.002G000100.8.p locus=Potri.002G000100 ID=Potri.002G000100.8.v4.1 annot-version=v4.1 ATGATGAGCTTTGTTGCAGCCGGCAGCCAGTGCTTCTGCTCCTCATCCCTTGCCTTGGGTCCCCGTCCAACTTCAGCCTCAAGGCCAAAGACAAGAAGAG CAAGGGAAGCTCGAGCAGCTGTAGTGGAAGCGAGACCACCACCAGCTCCAGCTCGAGTGATTCGTCCTGCAGTGCGAGATGCAAATTTAATAGTGGGAGG TGATCGAACGGAAGACCTGCAGGCGGAGGCAAGAGCCATGGCCCGTGCCGTCAACGCGTCCGTCTATAGCCCCGAGGTTCTGGCCGTTCAATACGGCTCT AGGCCAATCAAGGTGTTGCGAAGAACTCTTGAGATATTGACAGGATTGGGTTCATTTGGGTTGAAACTATTGCTGGACAAAAGGAATGGCGTGTTCGATC AGAAGAAGGGTATACGAGCAGCCGAACTCCGGAGAATTTTCACCCGGTTGGGCCCTACTTTTGTTAAATTAGGGCAGGGGTTGTCTACCAGGCCCGACAT ATGCCCCCCTGAGTATTTAGAGGAGCTCGCTGAGCTTCAGGATGCTTTGCCTACATTCCCAGACGCTGAAGCATTTTCGTGCATTGAGAGAGAATTGGGT CTCCCACTCGACTCGATTTTTTCATCCATTTCTCCTTCTCCAATTGCAGCTGCCAGTTTAGGCCAAGTTTACAAAGCTCAACTTACTTATTCTGGACAGA CTGTTGCTGTCAAGGTGCAACGCCCTGGTATCGAAGAAGCTATTGGACTTGACTTTTACCTCATTAGAGGACTCGGCTTTTTCATCAACAAATATGTAGA CATTATTACCAGTGATGTTGTTGCTCTCATTGACGAATTCGCACGCAGAGTTTATCAAGAGCTCAATTATGTGCAGGAGGGGCAGAATGCAAGGAGGTTT AAGAAATTGTATGCTGACAGGGAAGACATCCTTGTTCCAGATATCTTCTGGGATTATACAAGTGGCAAGGTGTTGACAATGGATTGGGTTGATGGAGTCA AATTAAATGAACAAGATGCTATTGAGAGACAAGGTTTAAAGGTTCTCGATCTAGTCAACACAGGTATACAATGCAGCCTCAGACAGCTACTTGAGTATGG ATACTTTCATGCAGATCCTCACCCTGGCAATCTCCTGGCAACACCCGAGGGAAAGCTTGCTTTTCTTGATTTTGGAATGATGAGTGAGACCCCAGAAGAA GCAAGATTTGCGATAATTGGTCATGTGGTTCACATGGTTAATAGGGATTACGAAGCCATGGCCCGTGATTACTATGCTCTAGATTTCTTGTCACGGGATG TAGATGTGTCTCCAATTGTTCCAGCACTGCGTAACTTCTTTGATGACGCACTCAATTACACTGTGAGCGAACTAAACTTCAAAACTCTAGTGAATGGTCT GGGTGCTGTTTTTTATCAGTATCCGTTTAATGTTCCAGCTTATTATGCTTTGATATTGAGGTCACTCACTGTACTTGAAGGCCTAGCCCTTTATGCTGAT CCTAATTTCAAGGTTCTGGCTGCTTCGTATCCATATTTTGCTAAAAGGCTTCTCACTGATCCAAATCCATACCTTAGAGATGCTCTTATTGAGTTGCTCT TTAAGGATGGTAGGTTTAGGTGGAATAGACTTGAAAACCTACTTGTCCAGGGAAGTAAAGATAGGGACTTCTCTGCAAATGATGCCTTACAACCTGTTTT GAAGCTATTATTGGGCCCAGATGGCGAACAGCTCCAAATTTTAGTTATTAAGGAGGCTGTCCGTGTCACTGAAGCTGTAGTGATCGGTACAGTAGTTGAT ACGTACAATTCTATCCCAAATGTTGTGAGGGCTTTAATCTTTAATGCCAATGTAGCTGGACCTCTTACAGTGAGTGATTCTGAAATTGATAGCATGATGG CGCTTCGGGACCAGGTTTTCAGGATATGGGGGCTTCTGCGATCCTCTCAAGATTTTGATCCGGCCCTTTTGCAACCTATATTACAGGTGCTTCAACAGCC TGAGGCACGCAGCCTCGGGGAGCGTGTTATAGGTGGCATCACACAACGGCTTGCAGCACGATTATTACAACAAGTTCTTCGAGCTCCGACCACAGTTTCT ACTTCCATTTCATAA
AA sequence Show only first row Show all	>Potri.002G000100.8 pacid=42779993 polypeptide=Potri.002G000100.8.p locus=Potri.002G000100 ID=Potri.002G000100.8.v4.1 annot-version=v4.1 MMSFVAAGSQCFCSSSLALGPRPTSASRPKTRRAREARAAVVEARPPPAPARVIRPAVRDANLIVGGDRTEDLQAEARAMARAVNASVYSPEVLAVQYGS RPIKVLRRTLEILTGLGSFGLKLLLDKRNGVFDQKKGIRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELAELQDALPTFPDAEAFSCIERELG LPLDSIFSSISPSPIAAASLGQVYKAQLTYSGQTVAVKVQRPGIEEAIGLDFYLIRGLGFFINKYVDIITSDVVALIDEFARRVYQELNYVQEGQNARRF KKLYADREDILVPDIFWDYTSGKVLTMDWVDGVKLNEQDAIERQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSETPEE ARFAIIGHVVHMVNRDYEAMARDYYALDFLSRDVDVSPIVPALRNFFDDALNYTVSELNFKTLVNGLGAVFYQYPFNVPAYYALILRSLTVLEGLALYAD PNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGRFRWNRLENLLVQGSKDRDFSANDALQPVLKLLLGPDGEQLQILVIKEAVRVTEAVVIGTVVD TYNSIPNVVRALIFNANVAGPLTVSDSEIDSMMALRDQVFRIWGLLRSSQDFDPALLQPILQVLQQPEARSLGERVIGGITQRLAARLLQQVLRAPTTVS TSIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79600			Protein kinase superfamily pro...		Potri.002G000100 [exp]	0	1
AT2G43750		CPACS1, ATCS-B,...	CHLOROPLAST O-ACETYLSERINE SUL...		Potri.013G127800 [exp]	1.41	0.9627
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111700 [exp]	1.73	0.9673
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Potri.017G039200 [exp]	4.58	0.9547
AT5G47860			Protein of unknown function (D...		Potri.001G072400 [exp]	4.79	0.9459
AT5G03430			phosphoadenosine phosphosulfat...		Potri.006G123000 [exp]	5.29	0.9444
AT3G10350			P-loop containing nucleoside t...		Potri.010G225100 [exp]	5.47	0.9626
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.005G125800 [exp]	5.47	0.9560
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Potri.005G012900 [exp]	5.74	0.9531
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004300 [exp]	6.24	0.9512
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	12.36	0.9542	Pt-CLPC.2

Compare expression of checked genes

Potri.002G000100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.