Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39970 389 / 3e-135 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) AT5G66380 140 / 1e-38 ATFOLT1 folate transporter 1 (.1) AT1G25380 107 / 5e-26 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT2G47490 106 / 6e-26 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT3G05290 94 / 2e-21 AtPNC1, PNC1 peroxisomal adenine nucleotide carrier 1 (.1) AT5G27520 85 / 3e-18 AtPNC2, PNC2 peroxisomal adenine nucleotide carrier 2 (.1) AT1G14560 75 / 7e-15 Mitochondrial substrate carrier family protein (.1) AT4G32400 71 / 2e-13 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G21390 70 / 4e-13 Mitochondrial substrate carrier family protein (.1) AT5G48970 67 / 4e-12 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192600 [exp] 387 / 1e-134 AT2G39970 460 / 7e-164 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.008G064800 [exp] 366 / 5e-126 AT2G39970 393 / 2e-137 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.002G200900 [exp] 119 / 7e-31 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.007G019000 [exp] 119 / 1e-30 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.014G125600 [exp] 114 / 5e-29 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.008G123700 [exp] 115 / 8e-29 AT1G25380 417 / 8e-146 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.010G121500 [exp] 113 / 3e-28 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.010G092100 [exp] 92 / 6e-21 AT5G27520 449 / 6e-160 peroxisomal adenine nucleotide carrier 2 (.1) Potri.013G023200 [exp] 82 / 2e-17 AT3G05290 449 / 5e-160 peroxisomal adenine nucleotide carrier 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009886 [exp] 374 / 2e-129 AT2G39970 484 / 2e-173 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10014839 [exp] 373 / 8e-129 AT2G39970 481 / 5e-172 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10034104 [exp] 108 / 2e-26 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10001463 [exp] 102 / 1e-24 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10028339 [exp] 93 / 2e-21 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10003041 [exp] 91 / 4e-21 AT1G25380 299 / 6e-102 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10015188 [exp] 81 / 6e-17 AT3G05290 480 / 4e-172 peroxisomal adenine nucleotide carrier 1 (.1) Lus10031510 [exp] 79 / 4e-16 AT3G05290 474 / 8e-170 peroxisomal adenine nucleotide carrier 1 (.1) Lus10010517 [exp] 77 / 1e-15 AT3G05290 437 / 2e-155 peroxisomal adenine nucleotide carrier 1 (.1) Lus10004565 [exp] 75 / 6e-15 AT5G46800 481 / 2e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.002G000200.8 pacid=42778995 polypeptide=Potri.002G000200.8.p locus=Potri.002G000200 ID=Potri.002G000200.8.v4.1 annot-version=v4.1 ATGTCGTCCAATTCTAACGCAGTAGCGAACGGGTTAGCAGGAGCAGGAGGCGGTATTGTTGCTCAAATCATCACTTATCCCCTCCAAACAGTGAATACGC GCCAGCAAACAGAGAGAATAGACAAGAAGAAGAAGCAACCTCAAACCCCTTCCAAACACTCTGGCACAACCACAGGCACTCTTCTTCAAATCCTCCAGGT CGTTAGAAGCGAAGGTTGGGGTGGACTATACAGCGGCCTCAGGCCTTCTTTGCTTGGAACTGCCGCTTCTCAGGGCATTTACTACTACTTTTATCAAGTC TTCAAAAACAAGGCCGAGTCCATTGCAGCTGTACGCAAAGCCAGGGGACTGGGAGATGGTACTGTTGGCATGTTTTCTTGGCTTGTTGTGGCTGCCATTG CTGGGTCCCTGAATGTATTGCTGACGAACCCGATATGGGTTCTTGTAACACGTATGCAGACACAAACTCAAGCAGAAAGAAAAATTATTGAGGGAAAGAA ACAAGCTTTATTGAGGGAAGCTTCAGAAAGAAGCTCAATAGATTCAACTTTGCAAGAGAAGTTAGCTGAACTTGATTCCATAAAACCTCATCCATATGGA ACTTTACAAGCGGCACGTGAAGTTTATAGTGAAGCAGGAATCACTGGATTTTGGAAAGGCATCATCCCTACCCTCATTATGGTGTGCAATCCATCAATCC AGTTCATGATTTATGAGAGTTCATCGAAGCATCTAAGGGCTAAACGTTCTGCTAACAAGCAGGGGTACAAAAATGTGACTGCTCTGGAGGTCTTTTTATT AGGAGCTTTGGCAAAATTGGGAGCAACTGTCTCAACATATCCCCTATTGGTTGTAAAGTCGAGGCTTCAAGCAAAACAGGAGATTGGTGGAAATAACCTC TTAAGATACTCAGGAACTCTTGATGCGATAGTCAAAATGATCCGTTATGAAGGATTGACTGGTTTTTACAAGGGGATGAGCACAAAGATAGTTCAGAGTG TGTTTGCAGCTTCTGTTCTTTTCATGATCAAAGAGGAGCTTGTTAAGGCCTACATGGTACTGGCTGATAAGAGCAAGAAACATCTGATAATTTCTAATAG TTGA
AA sequence Show only first row Show all	>Potri.002G000200.8 pacid=42778995 polypeptide=Potri.002G000200.8.p locus=Potri.002G000200 ID=Potri.002G000200.8.v4.1 annot-version=v4.1 MSSNSNAVANGLAGAGGGIVAQIITYPLQTVNTRQQTERIDKKKKQPQTPSKHSGTTTGTLLQILQVVRSEGWGGLYSGLRPSLLGTAASQGIYYYFYQV FKNKAESIAAVRKARGLGDGTVGMFSWLVVAAIAGSLNVLLTNPIWVLVTRMQTQTQAERKIIEGKKQALLREASERSSIDSTLQEKLAELDSIKPHPYG TLQAAREVYSEAGITGFWKGIIPTLIMVCNPSIQFMIYESSSKHLRAKRSANKQGYKNVTALEVFLLGALAKLGATVSTYPLLVVKSRLQAKQEIGGNNL LRYSGTLDAIVKMIRYEGLTGFYKGMSTKIVQSVFAASVLFMIKEELVKAYMVLADKSKKHLIISNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.002G000200 [exp]	0	1
AT1G78915			Tetratricopeptide repeat (TPR)...		Potri.008G003800 [exp]	1.00	0.9865
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Potri.001G044000 [exp]	4.00	0.9744
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Potri.006G133900 [exp]	4.24	0.9602
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	4.89	0.9626	RSH1.2
AT4G12830			alpha/beta-Hydrolases superfam...		Potri.014G175700 [exp]	5.74	0.9630
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Potri.015G037800 [exp]	7.74	0.9611	PtrcGR1,Pt-GR.3
AT1G32070		ATNSI	nuclear shuttle interacting (....		Potri.016G140000 [exp]	8.54	0.9181
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Potri.010G176400 [exp]	11.40	0.9527
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Potri.014G112266 [exp]	14.28	0.9489
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Potri.008G010400 [exp]	14.38	0.9541

Compare expression of checked genes

Potri.002G000200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.