Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21080 603 / 0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT1G76700 569 / 0 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G77020 408 / 1e-141 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39150 370 / 6e-127 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G21510 369 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G59980 74 / 4e-14 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT5G48030 73 / 6e-14 GFA2 gametophytic factor 2 (.1) AT1G59725 71 / 2e-13 DNAJ heat shock family protein (.1) AT1G28210 71 / 2e-13 ATJ1 DNAJ heat shock family protein (.1.2) AT2G42750 67 / 4e-12 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G260400 [exp] 740 / 0 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G074600 [exp] 425 / 3e-148 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G185800 [exp] 419 / 2e-145 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.009G119800 [exp] 367 / 4e-126 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.004G158300 [exp] 365 / 2e-125 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.001G271300 [exp] 76 / 9e-15 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 74 / 3e-14 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.010G035000 [exp] 69 / 7e-13 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 68 / 1e-12 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013198 [exp] 665 / 0 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10030713 [exp] 657 / 0 AT1G21080 573 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10042774 [exp] 406 / 2e-140 AT1G77020 497 / 1e-176 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028809 [exp] 369 / 1e-126 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017472 [exp] 369 / 2e-126 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10041972 [exp] 365 / 3e-125 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017980 [exp] 358 / 2e-122 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10029744 [exp] 355 / 2e-120 AT1G77020 452 / 6e-159 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10035855 [exp] 74 / 3e-14 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 73 / 1e-13 AT5G48030 516 / 0.0 gametophytic factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF14308 [poplar] [flax] DnaJ-X X-domain of DnaJ-containing
Representative CDS sequence Show only first row Show all	>Potri.002G000300.1 pacid=42777326 polypeptide=Potri.002G000300.1.p locus=Potri.002G000300 ID=Potri.002G000300.1.v4.1 annot-version=v4.1 ATGGTAAAGGAAACAGAATACTACGACGTGCTTGGAGTCAGTCCCACAGCCACCGAGGCTGAGATCAAGAAAGCTTATTACATCAAGGCACGGCAGGTCC ATCCTGATAAAAACCCTAATGATCCCCTTGCTGCGCTGAATTTTCAGGTGTTGGGAGAGGCATACCAAGTATTAAGCGATCCTGCCCAGCGGCAAGCTTA CGATGCTAATGGAAAATCTGGAATCTCAACCGAAGCAATCATTGAACCTGCAGCAATTTTTGCGATGCTTTTCGGCAGTGAGCTTTTTGAGGTCTACATA GGACAACTTGCTATGGCATCAATGGCTTCACTAGACATTTTCACAGAGGGGGAACAATTGGATACTAAAAAGTTGCAAGAGAAAATGAGAGTTGTTCAGA GGGAGAGGGAAGAAAAACTTGCAGAAATACTAAAAGATCGACTTAATCAATATGTACAAGGCAACAAAGAGGAGTTCATTAATCATGCTGAGGCTGAAGT AGCTAGGCTCTCAAATGCAGCTTATGGTGTTGATATGTTGAACACAATTGGTTACATTTATGCAAGACAAGCAGCAAAAGAGCTTGGGAAAAAAGTGATA TATCTGGGTGTGCCATTCATTGCTGAGTGGTTTAGAAACAAAGGCCACTTCATTAAATCCCAAGTAACTGCAGCAACAGGTGCCATTGCCCTGATCCAGT TACAAGAGGAAATGAAAAAGCAGCTCAGTGCGGAAGGGAATTATACAGAAGAAGAGCTTGAAGCATACATCCTATCCCACAAGAAGTTGATGACCGATTC CCTGTGGAAGCTTAATGTAGCTGATATTGAGGCCACTCTTTCCCGTGTTTGTCAGATGGTTCTTCAAGACAACAGTGTCAAGAAAGAAGAGCTTCGTGCA CGGGCCAAGGGTTTGAAAACTCTTGGTACAATCTTCCAGAGGGTAAAATTGGCCAATGGAGGTGAGGGTGAAACTGTGCTAGGTGGTTCTCTGCATCAAC TGAATGGAAGAGAACCAAGTTCTGATGCTTTTTCTCCTAATACGTCACCAAAATCTAAAAGTCCTGAAGAGGCATCTTATAGCACGTTGGCATCACAGAG CCCCTATGTGGAAGCTCCGCATTTTGATGGTGCTCAGTTTAACCACAACTTCCCAAGGCCAACGGCACCTCCTGGTGCACAGAGACATTCTTCTACAGGC AGTAGCTGA
AA sequence Show only first row Show all	>Potri.002G000300.1 pacid=42777326 polypeptide=Potri.002G000300.1.p locus=Potri.002G000300 ID=Potri.002G000300.1.v4.1 annot-version=v4.1 MVKETEYYDVLGVSPTATEAEIKKAYYIKARQVHPDKNPNDPLAALNFQVLGEAYQVLSDPAQRQAYDANGKSGISTEAIIEPAAIFAMLFGSELFEVYI GQLAMASMASLDIFTEGEQLDTKKLQEKMRVVQREREEKLAEILKDRLNQYVQGNKEEFINHAEAEVARLSNAAYGVDMLNTIGYIYARQAAKELGKKVI YLGVPFIAEWFRNKGHFIKSQVTAATGAIALIQLQEEMKKQLSAEGNYTEEELEAYILSHKKLMTDSLWKLNVADIEATLSRVCQMVLQDNSVKKEELRA RAKGLKTLGTIFQRVKLANGGEGETVLGGSLHQLNGREPSSDAFSPNTSPKSKSPEEASYSTLASQSPYVEAPHFDGAQFNHNFPRPTAPPGAQRHSSTG SS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21080			DNAJ heat shock N-terminal dom...		Potri.002G000300 [exp]	0	1
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Potri.005G147400 [exp]	25.39	0.6856
AT2G23770			protein kinase family protein ...		Potri.014G040000 [exp]	71.73	0.6667
AT5G41390			PLAC8 family protein (.1.2)		Potri.014G087600 [exp]	156.74	0.6412
AT5G18150			Methyltransferase-related prot...		Potri.013G058200 [exp]	164.40	0.6131
AT2G06530		VPS2.1	SNF7 family protein (.1)		Potri.018G065100 [exp]	186.76	0.6035
AT5G47390	MYB		myb-like transcription factor ...		Potri.001G155300 [exp]	250.89	0.6007
AT1G29220			transcriptional regulator fami...		Potri.011G068100 [exp]	269.56	0.5974

Compare expression of checked genes

Potri.002G000300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.