Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42400 385 / 2e-112 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT1G05830 156 / 2e-38 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G31650 150 / 1e-36 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT4G27910 136 / 3e-32 SDG16, ATX4 SET domain protein 16 (.1) AT5G53430 131 / 1e-30 SET29, ATX5, SDG29 SET domain group 29 (.1) AT3G61740 130 / 3e-30 SDG14, ATX3 SET domain protein 14 (.1.2) AT4G30860 114 / 3e-26 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT1G76710 114 / 4e-26 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT2G44150 97 / 4e-21 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT1G02580 99 / 1e-20 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G260100 [exp] 1805 / 0 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G232800 [exp] 154 / 1e-37 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.014G146300 [exp] 152 / 3e-37 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.012G013900 [exp] 130 / 2e-30 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.014G098400 [exp] 130 / 3e-30 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.002G170600 [exp] 129 / 4e-30 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.015G014300 [exp] 129 / 5e-30 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.018G023000 [exp] 127 / 5e-29 AT1G05830 160 / 2e-39 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.005G195400 [exp] 114 / 3e-26 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016051 [exp] 666 / 0 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10025172 [exp] 648 / 0 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10026725 [exp] 155 / 8e-38 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 154 / 1e-37 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10012626 [exp] 141 / 1e-33 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10010121 [exp] 139 / 4e-33 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10004012 [exp] 135 / 2e-32 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10030262 [exp] 127 / 4e-29 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10005007 [exp] 125 / 1e-28 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10016600 [exp] 110 / 5e-25 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain CL0673 [poplar] [flax] GYF PF02213 [poplar] [flax] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Potri.002G001000.1 pacid=42779426 polypeptide=Potri.002G001000.1.p locus=Potri.002G001000 ID=Potri.002G001000.1.v4.1 annot-version=v4.1 ATGGTCTCCTCAACACCCCGCTTTCAGGAAGAAGATGATTATTTTTCTTTCTCCTCTAGAAAGAGGTTGAAGATTTCAGATTTTCAGCGCCAAGAACAAC AAGATGCATATATCTCCACTGGTAACTGTGATGACCACACATTCACGGTGATGAGTAGCGCAGAAGAATGCTCATTCAATGGTTCTAGTTCCATACCAGA GATGAGTTGCAAGTCCAATGGAAATAGTGAAGGTATGCCTAATACTGGCGGAGCTTCATACGGGGGAGAGAATTGTTCTGGCCACTCACCACCTGCTTTT GTTAGTGGATGGATGTACCTTAATGAAAATGGACAAATGTGTGGTCCTTACATCCAGCAACAGCTTTACGAGGGATTATCTACTGGTTTCCTGCCTGAGG ATCTTCCTGTGTATCCCATTGCAAATGGGATATTGATCAATCCCGTTCCTCTCAACTACTTCAAGCAGTTTCCTGATCATGTTTCCACTGGTTTTACATA TCTTTGTTTGGGTACTTCAGGCACAACTATGCCTACAAATCACCCTACAGATTTGGCAGCACATAGGCAAGAAGGCGTTCAGTATGCTGCTCCAGTCTCT GCTCATCCAGATATAGAATCCATATCTGATTCCCGTGTTCGTAACCATACTTACAGCTTCAACCAACCGATCTCCAACTCTGAAGCAGCCGACTATGTCA CACCAGTTTCACTTGTGTCAGGTGAAGATTCCTGTTGGCTATTCAAGGACGATGATGGGAGGAAGCATGGGCCACATTCTCTTCTGGAGCTTTATTCTTG GTATCAGTACGGGTATCTTAAAGATTCATTAATGATATATCATGCTCAGAATAAGTTTAGACCCCTTCCTCTGCTATCTATTATGAATGCTTGGAGAATG GATAAACCTGAATCTTTCTCCATGACCGATGCCACCACTGAAACTGGCTCATCTCAAAGTTTCATATCTGTAATTTCTGAAGAAGTTTCCAGTCAATTGC ACTCCGGAATATTGAAAGCTGCTCGTAGATTTGCATTAGATGAGATAATCTGCAATGTCATTTCAGAGTTTGTTCGCACAAAGAGAGCAGAGAGATATCT TATGCTTGATAATCAGGCTGCCAAAACTTGTTCTGTGGACGGTAAAATGTCTCAATCTGCCAGTGAGAGGATGATTTTTTCTACTCCTGAGTGTGATGCT GCTGCTTGCAATTATATCTCTGATCAGACATGGGCTGATGAGTTGTCCGTGCAATTACCCAGAAGTACAAAATCTGTTGGAAATGCTGATGATTTCTGGG GGTCTTACGCTGTTATTTGTAGATGTCTTTCTGATTATTGCATGGAAGTCATGTGGAATGCTGTCTTTTATGATACCATAGCAGAGTATACAATTTCCTG GAGAAAGAGCAAACTTTGGTTCCATCATCCATATTTGTGCATGAAGATTGAAGAATTACCCAGTGAAACTTATTTTTCTGGCCAAGAATCTCCTGCTAGC AGTGTCGACTGCCCTCCTGGTTTTGAGCTTCTCAAAACTAAATCAGACCATACTGTGCCATCATCTATTACATCTTCATGTGCACATGTGGGGCAGGAGC CTTGCGAACAGAATAGCCTATCGTTTAAAGATTGTCCAGATGATGACATGAAATGCATCTTAGAAAGCGTAGCATATGAGCTGCATAAGTCCACAAAGGT GTCTTTGTTAGAGTATGTTGAAATTCTTGTGAAAGAGAAAGTGAAGAAATTAGTTAATTTTTCAGAGGATAAGAGATTAAATGAGGAAATTTTTGACTTT TCTATTCCATCCAGCCAGGCAAGTGAGTATGGTTCTATAGAAATGAAAGATGAGAAGATGATTGATTCAAACCAAATTCCTGCTGAGATAATGTTTTCCA GCAAACCTCAAAGCTCACTACAAGTGCAAAAATCTTTTTTTCCATTTCAATCTGAGAATGAAATATCCAATTTTCTGGCAATTGCTTTTAAAAGATTACG TCCATCTGTTGTCAATGCAATTGATGATGAAAACATTGATGGGCCACCACCACCTGGATTCAAAGATACTGCTCTATTCCCTTCCGCTATAAATAAATTC CGACCTTCAAAATCACTCAAATTGACTCCCAAGGTTGGGGCCTATGTCACCATTGCAATGTGCATGCAGAAGCTGCATGATGATGTACTTAATGTTTGGA AATCAATCTTTGTCGATGAAATTCTTCATCGATCTCCTAGATTATGCTGCTCTTCAGAAAAGCATACTGAACCTGGTATCAATGAGGAAGGAGCATTCAA ATTCACAGAGGGGTCGAACAAATTTCACAGCCCAGACTCTTCAGTACTGTCATTGGTTTCAGGTAAATACACGTATCATCGGAAGAGAAAGTTGGTGGGA AAGAAGTTGGGCTCATCTTCTCATTCTACTACTACAGTTGATTCTGGATTACTGAAACAGCCTGTGGAGAAGTCAAGAAAGCAGGATGTTCTTAGCGATG TTTCTGAGAATGTAGTGGTTCAACCTGTAAAGACTCCTAAGAAGAAGGGCCAGGCTTCATCTGTTGATGCTAAGCCTTTGAAAGCCACTATTGCTGAATC ATCTGTTAATGCTAGGCCTTTGAAAGCCACTATTGCTGAATCATCTGTTAATGTTGGGCCTTCAAAAGCCGCTGTCAAAAGCACCTTAAAAAGGGATCAA TCATTGCCCAAAAATATTAGTCGTCGGAAAGTAATGAAGATTGCACGAGCAGTTAATGATGATAAAGATGCCAAAGATTCCATAAAGACTTCTAGGGATG TGGTTGGGCTTATTGATTGCAATGGCCGTGATGCTGGAATTAAGAAATCAGGGACTACTGAATGTTCTAAGAAGACTCTAAACTCAACAAAGGTGTCAAA TTCAAAAAGGAAAAGCACAGTAGATGGTGGATCTGTGTCACACCCAATGAAGATTCTTAAAGTAGAAAATGATGTTAACAAGCAAGCAGCAACTGGACAG GTTATGGCACGGAAGACAAAGTCTGATCATGTTTTCTTATGTACAGCAACTAAGGTGTCAAAGTTGAAAAGGAAAAGCACAGTAAACGGTGGATCTGTGT CACATCCTATGAAGATTCTTAAAGTAGAAAATGGTGCTAATAAGCAAACAGCAACTGGACAGTTTACAGCACGGAAGACAAAGTCCAGTAAATCCAGGAT GTTAATTCCCTGCCCTAGATCTGATGGTTGTGCACGGTCTTCAATTAATGGTTGGGAATGGCATGCATGGTCAGTTAAAGCTAGTCCTGCTGAAAGAGCT CGTGTTAGGGGAGTGCGGTGCATTCATGCCAAGTATTCAGGTTCAGAGGCATATGCATCTCAGCTGTCAAATGGCAAGGTCCTTTCTGCAAGGACTAACA GGGTGAAGCTTCGCAATCTTCTTGCTGCTGCAGAAGGTGTTGACCTTTTGAAAGCAACACAGTTGAAGGCAAGAAAAAAGCGTTTATGTTTCCAGCGAAG CAAGATACATGACTGGGGTCTTGTTGCTCTAGAGTCAATTGAGGCTGAGGACTTTGTAATTGAATATGTCGGCGAACTGATTCGTCCACAAATATCTGAT ATACGTGAAAGACTTTATGAGAAGATGGGAATTGGCAGCAGTTATCTTTTTAGACTTGATGATGGTTACGTGGTTGATGCCACAAAACGTGGTGGGATTG CAAGATTTATAAACCATTCTTGCGAGCCGAACTGCTACACCAAGGTTATAAGCGTTGAAGGTCAGAAAAAAATTTTCATTTATGCAAAACGTTATATAGC TGCTGGTGAAGAAATTACTTACAATTACAAATTTCCTCTGGAGGATAAAAAGATACCTTGCAACTGTGGTTCTAGGAAGTGTCGTGGATCATTGAATTAG
AA sequence Show only first row Show all	>Potri.002G001000.1 pacid=42779426 polypeptide=Potri.002G001000.1.p locus=Potri.002G001000 ID=Potri.002G001000.1.v4.1 annot-version=v4.1 MVSSTPRFQEEDDYFSFSSRKRLKISDFQRQEQQDAYISTGNCDDHTFTVMSSAEECSFNGSSSIPEMSCKSNGNSEGMPNTGGASYGGENCSGHSPPAF VSGWMYLNENGQMCGPYIQQQLYEGLSTGFLPEDLPVYPIANGILINPVPLNYFKQFPDHVSTGFTYLCLGTSGTTMPTNHPTDLAAHRQEGVQYAAPVS AHPDIESISDSRVRNHTYSFNQPISNSEAADYVTPVSLVSGEDSCWLFKDDDGRKHGPHSLLELYSWYQYGYLKDSLMIYHAQNKFRPLPLLSIMNAWRM DKPESFSMTDATTETGSSQSFISVISEEVSSQLHSGILKAARRFALDEIICNVISEFVRTKRAERYLMLDNQAAKTCSVDGKMSQSASERMIFSTPECDA AACNYISDQTWADELSVQLPRSTKSVGNADDFWGSYAVICRCLSDYCMEVMWNAVFYDTIAEYTISWRKSKLWFHHPYLCMKIEELPSETYFSGQESPAS SVDCPPGFELLKTKSDHTVPSSITSSCAHVGQEPCEQNSLSFKDCPDDDMKCILESVAYELHKSTKVSLLEYVEILVKEKVKKLVNFSEDKRLNEEIFDF SIPSSQASEYGSIEMKDEKMIDSNQIPAEIMFSSKPQSSLQVQKSFFPFQSENEISNFLAIAFKRLRPSVVNAIDDENIDGPPPPGFKDTALFPSAINKF RPSKSLKLTPKVGAYVTIAMCMQKLHDDVLNVWKSIFVDEILHRSPRLCCSSEKHTEPGINEEGAFKFTEGSNKFHSPDSSVLSLVSGKYTYHRKRKLVG KKLGSSSHSTTTVDSGLLKQPVEKSRKQDVLSDVSENVVVQPVKTPKKKGQASSVDAKPLKATIAESSVNARPLKATIAESSVNVGPSKAAVKSTLKRDQ SLPKNISRRKVMKIARAVNDDKDAKDSIKTSRDVVGLIDCNGRDAGIKKSGTTECSKKTLNSTKVSNSKRKSTVDGGSVSHPMKILKVENDVNKQAATGQ VMARKTKSDHVFLCTATKVSKLKRKSTVNGGSVSHPMKILKVENGANKQTATGQFTARKTKSSKSRMLIPCPRSDGCARSSINGWEWHAWSVKASPAERA RVRGVRCIHAKYSGSEAYASQLSNGKVLSARTNRVKLRNLLAAAEGVDLLKATQLKARKKRLCFQRSKIHDWGLVALESIEAEDFVIEYVGELIRPQISD IRERLYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGQKKIFIYAKRYIAAGEEITYNYKFPLEDKKIPCNCGSRKCRGSLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Potri.002G001000 [exp]	0	1
AT2G39580			unknown protein		Potri.008G052500 [exp]	1.00	0.8947
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242500 [exp]	2.00	0.8591
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Potri.018G057200 [exp]	2.44	0.8527
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Potri.016G096500 [exp]	2.82	0.8523
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.001G173900 [exp]	5.47	0.8309
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.010G019150 [exp]	5.91	0.8471
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.006G271400 [exp]	6.32	0.8363
AT1G02890			AAA-type ATPase family protein...		Potri.002G205900 [exp]	7.74	0.8066
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Potri.005G260100 [exp]	8.36	0.8211
AT2G01460			P-loop containing nucleoside t...		Potri.008G130200 [exp]	9.79	0.8260

Compare expression of checked genes

Potri.002G001000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.