Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76660 487 / 1e-170 unknown protein AT5G52430 125 / 4e-31 hydroxyproline-rich glycoprotein family protein (.1) AT1G63720 106 / 4e-25 unknown protein AT4G25620 91 / 2e-19 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G260000 [exp] 735 / 0 AT1G76660 453 / 7e-158 unknown protein Potri.012G144200 [exp] 153 / 7e-41 AT4G25620 382 / 2e-128 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G102200 [exp] 145 / 3e-38 AT5G52430 232 / 2e-71 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G129400 [exp] 126 / 1e-31 AT5G52430 193 / 1e-56 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016050 [exp] 516 / 0 AT1G76660 438 / 5e-152 unknown protein Lus10025171 [exp] 502 / 6e-173 AT1G76660 420 / 1e-141 unknown protein Lus10039253 [exp] 149 / 4e-39 AT5G52430 374 / 6e-125 hydroxyproline-rich glycoprotein family protein (.1) Lus10024642 [exp] 142 / 3e-37 AT5G52430 261 / 2e-82 hydroxyproline-rich glycoprotein family protein (.1) Lus10027498 [exp] 145 / 4e-37 AT5G52430 348 / 2e-113 hydroxyproline-rich glycoprotein family protein (.1) Lus10032276 [exp] 141 / 1e-36 AT5G52430 265 / 8e-84 hydroxyproline-rich glycoprotein family protein (.1) Lus10028779 [exp] 108 / 5e-25 AT5G52430 191 / 6e-54 hydroxyproline-rich glycoprotein family protein (.1) Lus10017503 [exp] 108 / 5e-25 AT5G52430 183 / 5e-51 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G001100.6 pacid=42780035 polypeptide=Potri.002G001100.6.p locus=Potri.002G001100 ID=Potri.002G001100.6.v4.1 annot-version=v4.1 ATGAGCAATTTGTCATCTACTTATAATTGTTTCGCTATGTTGAGCTATGTTGAGCAGCGCAAGAGATGGGGAGGATGCTGGGGAGCATTGTCTTGTTTCA GCGTGCAAAAAGGTGGAAAGCGTATTGTGCCTGCATCTCGAATTCCTGAGGGCAATGCATCAGCAGCCCAGCCAAATGGACCTCAACCTGTTGGGCTAAC CAATCAAGCTACAGCACTAGCTCCATCACTTCTAGCTCCCCCGTCTTCACCAGCGTCATTTACAAATTCTGCTCTCCCATCTACTGCTCAGTCTCCTAGC TGCTTCCTTTCATTATCTGCCAACTCACCTGGGGGTCCTTCATCCACAATGTATGCCACTGGACCTTATGCTCACGAAACACAACTGGTTTCTCCTCCCG TTTTCTCAACCTTCACAACAGAGCCGTCTACTGCTCCTCTTACACCCCCACCAGAGTTGGCTCACTTAACTACGCCATCTTCCCCAGACGTTCCTTTTGC TCAATTCCTCACATCATCTAGGGATCTCAAAGGCGCTGAAAAGAACAATTACATTGTTGCATCTGATCTTCAATCAACATATTCTCTCTATCCTGGAAGT CCTGCCAGCAGTCTCCTATCACCAATTTCTAGGACTTCAGGTGACTGTTTATCAGCGTCTTTTCCTGAACGTGGTTTTCCCCGGGAGTGGGGTCCTTCAG TTTCTCCTCAAAATGGAAAATATTCAAGGAGTGGATCTGGCAGGCTTTTTGGGCACGAGACTACTGGTGCCTCCATGGTGTCACATGATTCAAATTTCTT CTGTCCTGCTACATTTGCACGATTCTATCTGGACCATGATCCAAATACTGGTGGGAGGTTAAGTGTTTCCAAGGATTCGGATGTTTACCCTGCTAGTGGA AATGGACACCAGAACAGGCATAATAAAAGTCCCAAGCAAGATGCAGAAGAATTAGAAGCTTACAGAGCATCGTTTGGGTTCAGCGCTGATGAGATAATCA CTACTCCTCAATATGTAGAGATTTCTGATGTAATGGAGGACACATTTAGCATGACTCCTTTTACTTCAGCCAAACCTACCATGGAAGAAAGTATGGAAGC TTCATTACTGAATGAGGGTCAAAAAGCAAATGCAAACTTGCCAAAACAGAATAGCCTTAAATTGAAATCAGATCTTGCTGACCGGGTAGTATGCTGTGAA GTGCCTGTCACGTCTGATAGATATGAAGTAAACTCAGACCCTAAATCAAGATGGCAACCTGGGAATGTCTCTGGATCAAGTACACCCAGTAACCATGTTG TGACCGATGATGACATATTCTCAAAGATGGCATCATCTAAAACCAGCAGGAAATATCATTTGGGATTATCGAGCTCTGATGCAGAAATTGACTACAGGAG GGGAAGAAGCTTAAGAGAAGGCAAAGGAGATTTTGCATGGCATGACTAG
AA sequence Show only first row Show all	>Potri.002G001100.6 pacid=42780035 polypeptide=Potri.002G001100.6.p locus=Potri.002G001100 ID=Potri.002G001100.6.v4.1 annot-version=v4.1 MSNLSSTYNCFAMLSYVEQRKRWGGCWGALSCFSVQKGGKRIVPASRIPEGNASAAQPNGPQPVGLTNQATALAPSLLAPPSSPASFTNSALPSTAQSPS CFLSLSANSPGGPSSTMYATGPYAHETQLVSPPVFSTFTTEPSTAPLTPPPELAHLTTPSSPDVPFAQFLTSSRDLKGAEKNNYIVASDLQSTYSLYPGS PASSLLSPISRTSGDCLSASFPERGFPREWGPSVSPQNGKYSRSGSGRLFGHETTGASMVSHDSNFFCPATFARFYLDHDPNTGGRLSVSKDSDVYPASG NGHQNRHNKSPKQDAEELEAYRASFGFSADEIITTPQYVEISDVMEDTFSMTPFTSAKPTMEESMEASLLNEGQKANANLPKQNSLKLKSDLADRVVCCE VPVTSDRYEVNSDPKSRWQPGNVSGSSTPSNHVVTDDDIFSKMASSKTSRKYHLGLSSSDAEIDYRRGRSLREGKGDFAWHD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76660			unknown protein		Potri.002G001100 [exp]	0	1
AT5G58000			Reticulon family protein (.1)		Potri.018G108200 [exp]	2.82	0.9227
AT5G45290			RING/U-box superfamily protein...		Potri.003G106600 [exp]	4.24	0.9298
AT3G51850		CPK13	calcium-dependent protein kina...		Potri.016G117200 [exp]	5.47	0.9134	CPK13.2
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Potri.019G068400 [exp]	6.32	0.8996
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.009G113700 [exp]	7.74	0.8981	Pt-ALPHA.12
AT5G50000			Protein kinase superfamily pro...		Potri.015G074400 [exp]	9.79	0.8925
AT3G59110			Protein kinase superfamily pro...		Potri.005G203300 [exp]	10.48	0.8723
AT2G30700			unknown protein		Potri.007G133800 [exp]	13.19	0.8715
AT2G47500			P-loop nucleoside triphosphate...		Potri.002G201000 [exp]	14.14	0.9078
AT3G45850			P-loop containing nucleoside t...		Potri.001G233700 [exp]	15.49	0.9021

Compare expression of checked genes

Potri.002G001100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.